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GEO accession:
Sample GSM40553
Query DataSets for GSM40553
Status
Public on May 31, 2005
Title
Total RNA - hypoxia stress
Sample type
RNA
Source name
7d-old WT ler seedlings submitted to 12h hypoxia
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Total mRNA extracted from 7-d old seedlings, treated for 12h of hypoxia under low light (45uM m-2 s-2) conditions.
Submission date
Jan 31, 2005
Last update date
Aug 28, 2018
Contact name
Cristina Branco-Price
E-mail(s)
[email protected]
Phone
951 827 6276
Fax
951 827 4437
Organization name
University of California, Riverside
Department
Botany and Plant Sciences
Lab
Julia Bailey-Serres
Street address
2215 batchelor Hall
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL198
Series (1)
GSE2218
Changes in transcript abundance and association with large polysomes in response to hypoxia stress
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
Stat Pairs
probe pairs per gene on the chip
Stat Pairs Used
probe pairs used to quantify signal intensity for each gene
VALUE
fluorescence intensity corresponding to abundance of transcript
ABS_CALL
present (P), absent (A) or marginal (M). Dependent on signal intensity above, below or on detection threshold (MAS 5.0 software default)
DETECTION P-VALUE
statistical value that validates detection call
Data table
ID_REF
Stat Pairs
Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
20
20
252.5
P
0.005565
AFFX-BioB-M_at
20
20
371.3
P
0.00007
AFFX-BioB-3_at
20
20
209.4
P
0.00011
AFFX-BioC-5_at
20
20
688
P
0.000127
AFFX-BioC-3_at
20
20
430.6
P
0.00007
AFFX-BioDn-5_at
20
20
574.6
P
0.000052
AFFX-BioDn-3_at
20
20
2706.4
P
0.000052
AFFX-CreX-5_at
20
20
6360.9
P
0.000044
AFFX-CreX-3_at
20
20
9185.6
P
0.000044
AFFX-DapX-5_at
20
20
25.7
A
0.239063
AFFX-DapX-M_at
20
20
31.5
A
0.227636
AFFX-DapX-3_at
20
20
3.7
A
0.960339
AFFX-LysX-5_at
20
20
2.6
A
0.824672
AFFX-LysX-M_at
20
20
6.7
A
0.891021
AFFX-LysX-3_at
20
20
36.8
A
0.354453
AFFX-PheX-5_at
20
20
4.8
A
0.897835
AFFX-PheX-M_at
20
20
4.6
A
0.760937
AFFX-PheX-3_at
20
20
10.6
A
0.897835
AFFX-ThrX-5_at
20
20
3.1
A
0.783476
AFFX-ThrX-M_at
20
20
4.6
A
0.772364
Total number of rows:
22810
Table truncated, full table size
723 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM40553.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM40553.EXP.gz
506 b
(ftp)
(http)
EXP
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