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Status
Public on May 31, 2005
Title
Total RNA, non-stressed
Sample type
RNA
Source name
7d-old WT ler seedlings
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
Total mRNA extracted from 7-d old seedlings, treated with low light (45uM m-2 s-2).
Submission date
Jan 31, 2005
Last update date
Aug 28, 2018
Contact name
Cristina Branco-Price
E-mail(s)
[email protected] Phone
951 827 6276
Fax
951 827 4437
Organization name
University of California, Riverside
Department
Botany and Plant Sciences
Lab
Julia Bailey-Serres
Street address
2215 batchelor Hall
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL198 Series (1)
GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
Relations Reanalyzed by
GSE119083
Data table header descriptions ID_REF
Stat Pairs number of probe pairs for each gene on the chip
Stat Pairs Used probe pairs used to quantify signal intensity for each gene on the chip
VALUE fluorescence intensity related to abundance of particular transcripts, calculated using all the signals provided by each probe pair of each gene, by use of Tukey bi-weight
ABS_CALL dependent on signal intensity, above (P), below (A) or marginally (M) on the detection threshold (MAS 5.0 default). Measures strong enough signals to be quantified.
DETECTION P-VALUE Statistical value that validates detection call, based on signal from each probe pair from each gene
Data table ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
20
20
340
P
0.000754
AFFX-BioB-M_at
20
20
476
P
0.00006
AFFX-BioB-3_at
20
20
292.1
P
0.00011
AFFX-BioC-5_at
20
20
835.9
P
0.00007
AFFX-BioC-3_at
20
20
471.1
P
0.000044
AFFX-BioDn-5_at
20
20
669.4
P
0.000044
AFFX-BioDn-3_at
20
20
3478.8
P
0.000052
AFFX-CreX-5_at
20
20
7929.4
P
0.000044
AFFX-CreX-3_at
20
20
9143.7
P
0.000044
AFFX-DapX-5_at
20
20
13.7
A
0.425962
AFFX-DapX-M_at
20
20
28.6
A
0.216524
AFFX-DapX-3_at
20
20
11.1
A
0.860518
AFFX-LysX-5_at
20
20
1
A
0.953518
AFFX-LysX-M_at
20
20
2.9
A
0.98333
AFFX-LysX-3_at
20
20
24.6
A
0.262827
AFFX-PheX-5_at
20
20
2.8
A
0.883887
AFFX-PheX-M_at
20
20
3.2
A
0.824672
AFFX-PheX-3_at
20
20
10.3
A
0.868639
AFFX-ThrX-5_at
20
20
4.6
A
0.737173
AFFX-ThrX-M_at
20
20
3
A
0.794268
22810 723 Kbytes .Supplementary file Size Download File type/resource GSM40552.CEL.gz
3.4 Mb
(ftp) (http) CEL
GSM40552.EXP.gz
508 b
(ftp) (http) EXP
