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Sample GSM403986 Query DataSets for GSM403986
Status Public on May 16, 2009
Title CD4TESTNA#1
Sample type RNA
 
Source name spleen
Organism Mus musculus
Characteristics age: 6 weeks
genetic background: 4+ 8- B220-
phenotype markers: 4+8-B220-
separation method: dissection/trimming
Sex: male
Extracted molecule total RNA
Extraction protocol Glass slide teasing Flow sorting
Label Biotin
Label protocol Affy GeneChip WT cDNA Synthesis kit/cRNA Cleanup kit
 
Hybridization protocol Affy 1.0 ST Hyb Kit
Scan protocol Affymetrix GeneChip Scanner
Description CD4 Test NA#1
Data processing The datasets were pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
 
Submission date May 15, 2009
Last update date May 24, 2016
Contact name Liang Yang
Organization name Harvard Medical School
Department Pathology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6246
Series (1)
GSE15907 ImmGen Microarray Phase 1

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
10344620 14.6718
10344622 257.602
10344624 398.2626
10344633 819.2954
10344637 222.2541
10344653 18.9665
10344658 252.732
10344674 11.4957
10344679 51.34
10344707 314.6719
10344713 351.6458
10344723 173.5965
10344725 46.234
10344741 2531.0948
10344743 29.5123
10344750 491.0152
10344772 24.4829
10344789 140.5818
10344797 339.0037
10344799 182.1708

Total number of rows: 24922

Table truncated, full table size 422 Kbytes.




Supplementary file Size Download File type/resource
GSM403986_EA07068_81316_MoGene_CD4+TESTNA.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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