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Status
Public on Jan 27, 2006
Title
WT, PR03M003v0
Sample type
RNA
Source name
medial gastrocnemius
Organism
Mus musculus Extracted molecule
total RNA
Description
Medial gastrocnemius removed from 3-month old muscle glycogen synthase WT or knockout mouse. RNA was extracted using GibcoBRL TRIzol Reagent and a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Submission date
Jan 27, 2005
Last update date
May 29, 2005
Contact name
Peter Roach
E-mail(s)
[email protected] Phone
317-274-1583
Organization name
IU School of Medicine
Department
Street address
City
Indianapolis
State/province
IN
ZIP/Postal code
46202
Country
USA
Platform ID
GPL339 Series (1)
GSE2198 Comparison of transcripts from the anterior tibialis, gastrocnemius, and liver of glycogen synthase WT, GSL30 or KO mice
Data table header descriptions ID_REF
VALUE signal, a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present(P), absent(A), marginal(M), or no call(NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
803.90000
P
0.00110
AFFX-BioB-M_at
990.60000
P
0.00044
AFFX-BioB-3_at
500.90000
P
0.00050
AFFX-BioC-5_at
1662.90000
P
0.00012
AFFX-BioC-3_at
1098.50000
P
0.00006
AFFX-BioDn-5_at
1326.90000
P
0.00007
AFFX-BioDn-3_at
7915.80000
P
0.00022
AFFX-CreX-5_at
12812.80000
P
0.00004
AFFX-CreX-3_at
22539.30000
P
0.00004
AFFX-DapX-5_at
58.40000
A
0.15673
AFFX-DapX-M_at
86.00000
P
0.03097
AFFX-DapX-3_at
13.40000
A
0.78347
AFFX-LysX-5_at
5.10000
A
0.79426
AFFX-LysX-M_at
99.90000
A
0.21652
AFFX-LysX-3_at
26.50000
A
0.44064
AFFX-PheX-5_at
4.40000
A
0.91052
AFFX-PheX-M_at
8.00000
A
0.89785
AFFX-PheX-3_at
124.30000
A
0.20573
AFFX-ThrX-5_at
11.30000
A
0.83413
AFFX-ThrX-M_at
64.40000
A
0.30060
22690 702 Kbytes .Supplementary file Size Download File type/resource GSM40074.CEL.gz
3.5 Mb
(ftp) (http) CEL
