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Sample GSM396195 Query DataSets for GSM396195
Status Public on Apr 14, 2010
Title ETOH_VIII_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Ethanol
group no.: 23
large batch: Y
plate: 4164379004
hybridization batch: V
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.327774297
ILMN_3160339 6.952752679
ILMN_3161159 7.518494286
ILMN_2758597 6.943244011
ILMN_2644469 12.80936514
ILMN_2656393 7.72561667
ILMN_3160634 7.350008934
ILMN_3161394 10.55196082
ILMN_2610322 6.652036384
ILMN_2741606 7.161540474
ILMN_1247267 10.05001576
ILMN_2594811 7.058049554
ILMN_2689425 6.496278076
ILMN_2745565 6.82064038
ILMN_1212992 6.645900184
ILMN_2629183 6.601341496
ILMN_1251092 8.788539193
ILMN_2715803 9.995003343
ILMN_2762509 12.01710709
ILMN_2496817 10.2417948

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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