NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM396180 Query DataSets for GSM396180
Status Public on Apr 14, 2010
Title ETOH_IV_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 4h
drug: Ethanol
group no.: 22
large batch: Y
plate: 4060001020
hybridization batch: V
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.443906653
ILMN_3160339 6.895152318
ILMN_3161159 7.290014989
ILMN_2758597 7.101283948
ILMN_2644469 12.93460415
ILMN_2656393 7.805929757
ILMN_3160634 7.424013615
ILMN_3161394 10.63313176
ILMN_2610322 6.742645902
ILMN_2741606 7.334344327
ILMN_1247267 10.29829823
ILMN_2594811 6.944334087
ILMN_2689425 6.583769117
ILMN_2745565 6.680599489
ILMN_1212992 6.667440445
ILMN_2629183 6.800937838
ILMN_1251092 9.383799317
ILMN_2715803 9.958812987
ILMN_2762509 11.85289605
ILMN_2496817 10.37391739

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap