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Sample GSM396177 Query DataSets for GSM396177
Status Public on Apr 14, 2010
Title ..SAL_VIII_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Saline
group no.: 39
large batch: Y
plate: 4060001020
hybridization batch: V
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.238241581
ILMN_3160339 6.839676552
ILMN_3161159 7.582174828
ILMN_2758597 6.958866213
ILMN_2644469 12.96341828
ILMN_2656393 7.663033851
ILMN_3160634 7.303598459
ILMN_3161394 10.84825525
ILMN_2610322 6.483224354
ILMN_2741606 7.068090818
ILMN_1247267 9.988265907
ILMN_2594811 7.014507089
ILMN_2689425 6.294908908
ILMN_2745565 6.527629762
ILMN_1212992 6.47098847
ILMN_2629183 6.608784188
ILMN_1251092 8.969273018
ILMN_2715803 9.961984596
ILMN_2762509 11.86342531
ILMN_2496817 10.58132492

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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