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Sample GSM396171 Query DataSets for GSM396171
Status Public on Apr 14, 2010
Title HER_VIII_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Heroin
group no.: 2
large batch: X
plate: 4051964045
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.095148942
ILMN_3160339 6.707585418
ILMN_3161159 7.712814719
ILMN_2758597 6.821659713
ILMN_2644469 12.96013687
ILMN_2656393 7.784774877
ILMN_3160634 7.086240184
ILMN_3161394 11.07952139
ILMN_2610322 6.464921182
ILMN_2741606 7.158560077
ILMN_1247267 10.33667836
ILMN_2594811 7.124650673
ILMN_2689425 6.257635455
ILMN_2745565 6.50983963
ILMN_1212992 6.30058372
ILMN_2629183 6.397938494
ILMN_1251092 9.512534181
ILMN_2715803 9.907547477
ILMN_2762509 12.36778429
ILMN_2496817 10.27476946

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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