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Sample GSM396168 Query DataSets for GSM396168
Status Public on Apr 14, 2010
Title HER_I_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Heroin
group no.: 11
large batch: X
plate: 4051964044
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.323204077
ILMN_3160339 6.930164164
ILMN_3161159 7.894296139
ILMN_2758597 6.885159682
ILMN_2644469 12.79592326
ILMN_2656393 7.989030511
ILMN_3160634 7.390111475
ILMN_3161394 11.18522548
ILMN_2610322 6.50768708
ILMN_2741606 7.237467362
ILMN_1247267 10.4648335
ILMN_2594811 7.198508683
ILMN_2689425 6.703572883
ILMN_2745565 6.695307158
ILMN_1212992 6.519344753
ILMN_2629183 6.737694139
ILMN_1251092 9.318019839
ILMN_2715803 9.915360101
ILMN_2762509 12.26514378
ILMN_2496817 10.06323361

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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