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Sample GSM396157 Query DataSets for GSM396157
Status Public on Apr 14, 2010
Title MF_II_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 2h
drug: Morphine
group no.: 4
large batch: X
plate: 1957998117
hybridization batch: I
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.28183005
ILMN_3160339 6.888724657
ILMN_3161159 7.451340077
ILMN_2758597 7.062380042
ILMN_2644469 12.96013687
ILMN_2656393 7.96230329
ILMN_3160634 7.337369666
ILMN_3161394 10.5727449
ILMN_2610322 6.784474036
ILMN_2741606 7.339361496
ILMN_1247267 10.13705555
ILMN_2594811 7.209052569
ILMN_2689425 6.386777766
ILMN_2745565 6.870296656
ILMN_1212992 6.484741915
ILMN_2629183 6.882740294
ILMN_1251092 8.901826541
ILMN_2715803 10.3249804
ILMN_2762509 11.74245856
ILMN_2496817 10.23731383

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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