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Sample GSM396155 Query DataSets for GSM396155
Status Public on Apr 14, 2010
Title HER_VIII_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Heroin
group no.: 2
large batch: X
plate: 1957998117
hybridization batch: I
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.341063237
ILMN_3160339 7.012283199
ILMN_3161159 7.479316748
ILMN_2758597 7.252372442
ILMN_2644469 12.79172173
ILMN_2656393 7.897002134
ILMN_3160634 7.456611957
ILMN_3161394 10.85519406
ILMN_2610322 6.61593527
ILMN_2741606 7.428859101
ILMN_1247267 9.938807213
ILMN_2594811 7.327526506
ILMN_2689425 6.463312136
ILMN_2745565 6.704324183
ILMN_1212992 6.276165555
ILMN_2629183 6.844187522
ILMN_1251092 8.886067118
ILMN_2715803 10.41403977
ILMN_2762509 11.77344079
ILMN_2496817 10.1960108

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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