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Sample GSM396138 Query DataSets for GSM396138
Status Public on Apr 14, 2010
Title HER_I_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Heroin
group no.: 11
large batch: X
plate: 1953348003
hybridization batch: III
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.363467173
ILMN_3160339 7.143529145
ILMN_3161159 7.496679236
ILMN_2758597 6.938716966
ILMN_2644469 12.87248719
ILMN_2656393 7.830115788
ILMN_3160634 7.561068083
ILMN_3161394 10.86852469
ILMN_2610322 6.349067686
ILMN_2741606 7.313602005
ILMN_1247267 10.04879835
ILMN_2594811 7.020977456
ILMN_2689425 6.180014813
ILMN_2745565 6.558118549
ILMN_1212992 6.636149671
ILMN_2629183 6.576328244
ILMN_1251092 9.296970305
ILMN_2715803 10.0119509
ILMN_2762509 12.15194464
ILMN_2496817 10.38749752

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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