NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM396130 Query DataSets for GSM396130
Status Public on Apr 14, 2010
Title MF_I_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Morphine
group no.: 3
large batch: X
plate: 1953348002
hybridization batch: III
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.349543775
ILMN_3160339 7.057952283
ILMN_3161159 7.443952502
ILMN_2758597 6.96635411
ILMN_2644469 12.89095525
ILMN_2656393 7.534689682
ILMN_3160634 7.423739959
ILMN_3161394 10.93034979
ILMN_2610322 6.576154772
ILMN_2741606 7.371005407
ILMN_1247267 9.946595574
ILMN_2594811 6.957785568
ILMN_2689425 6.413925585
ILMN_2745565 6.71317086
ILMN_1212992 6.221984993
ILMN_2629183 6.820030146
ILMN_1251092 9.665542997
ILMN_2715803 9.975077941
ILMN_2762509 12.05643389
ILMN_2496817 10.54644478

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap