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Sample GSM389978 Query DataSets for GSM389978
Status Public on Feb 28, 2010
Title X4320028046_D
Sample type RNA
 
Source name PAXgene stabilized blood
Organism Homo sapiens
Characteristics cell type: PBMC
Growth protocol Peripheral blood samples
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Non Bronchial Carcinoma
Data processing The data were normalised using quantile normalisation in R
 
Submission date Apr 07, 2009
Last update date Oct 23, 2009
Contact name Thomas Zander
Organization name University Hospital Cologne
Street address Kerpenerstr. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL6102
Series (1)
GSE12771 Lung cancer prediction

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 55.93830709
ILMN_1660305 79.17300337
ILMN_1792173 74.65957327
ILMN_1762337 40.54222781
ILMN_1736007 44.93290204
ILMN_1787689 62.51975372
ILMN_1731507 39.32783429
ILMN_1814316 41.35700663
ILMN_1745607 44.2987
ILMN_1757454 54.41084235
ILMN_1668111 61.26323985
ILMN_1735045 49.82425015
ILMN_1680754 56.09560883
ILMN_1659452 45.55647163
ILMN_1767388 62.15496694
ILMN_1673870 48.20168689
ILMN_1675204 49.90753107
ILMN_1755321 54.27713689
ILMN_1698554 99.43230526
ILMN_1814092 56.47055893

Total number of rows: 48701

Table truncated, full table size 1183 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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