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Sample GSM389963 Query DataSets for GSM389963
Status Public on Feb 28, 2010
Title X4320028020_E
Sample type RNA
 
Source name PAXgene stabilized blood
Organism Homo sapiens
Characteristics cell type: PBMC
Growth protocol Peripheral blood samples
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Bronchial Carcinoma
Data processing The data were normalised using quantile normalisation in R
 
Submission date Apr 07, 2009
Last update date Oct 23, 2009
Contact name Thomas Zander
Organization name University Hospital Cologne
Street address Kerpenerstr. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL6102
Series (1)
GSE12771 Lung cancer prediction

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 51.82341301
ILMN_1660305 50.98737969
ILMN_1792173 77.48031694
ILMN_1762337 41.50978184
ILMN_1736007 48.33419566
ILMN_1787689 59.15978434
ILMN_1731507 38.27009372
ILMN_1814316 49.66971173
ILMN_1745607 42.93327898
ILMN_1757454 52.18770515
ILMN_1668111 58.90810444
ILMN_1735045 73.41781735
ILMN_1680754 65.40423668
ILMN_1659452 46.02127821
ILMN_1767388 87.55031934
ILMN_1673870 47.88810153
ILMN_1675204 45.64648362
ILMN_1755321 60.34110857
ILMN_1698554 84.79423423
ILMN_1814092 61.96042893

Total number of rows: 48701

Table truncated, full table size 1183 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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