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Sample GSM389924 Query DataSets for GSM389924
Status Public on Feb 28, 2010
Title X4320028047_B
Sample type RNA
 
Source name PAXgene stabilized blood
Organism Homo sapiens
Characteristics cell type: PBMC
Growth protocol Peripheral blood samples
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Non Bronchial Carcinoma
Data processing The data were normalised using quantile normalisation in R
 
Submission date Apr 07, 2009
Last update date Oct 23, 2009
Contact name Thomas Zander
Organization name University Hospital Cologne
Street address Kerpenerstr. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL6102
Series (1)
GSE12771 Lung cancer prediction

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 53.92235663
ILMN_1660305 53.43626811
ILMN_1792173 62.5883349
ILMN_1762337 47.34982311
ILMN_1736007 49.07054061
ILMN_1787689 60.88572995
ILMN_1731507 39.38863056
ILMN_1814316 40.95566724
ILMN_1745607 45.45736867
ILMN_1757454 49.35393311
ILMN_1668111 63.81439485
ILMN_1735045 76.80056939
ILMN_1680754 80.47292026
ILMN_1659452 44.46536281
ILMN_1767388 92.05407893
ILMN_1673870 42.53707112
ILMN_1675204 47.8211252
ILMN_1755321 63.79696878
ILMN_1698554 108.7460164
ILMN_1814092 80.81264546

Total number of rows: 48701

Table truncated, full table size 1183 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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