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Sample GSM3806 Query DataSets for GSM3806
Status Public on Jan 29, 2003
Title RH_TH3_8A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD25-CD44-CD4-CD8+
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 3 19 19 19 0.21 0.52 0 0 1.3 141 A
IL10_at 5 4 20 20 18 0.25 0.08 0 0 1.3 73 A
GMCSF_at 5 5 20 20 18 0.25 0.34 0 0 1.0 -534 A
TNFRII_at 7 3 20 20 20 0.35 0.94 0 0 2.3 328 A
MIP1-B_at 8 4 20 20 18 0.40 1.16 0 0 2.0 974 A
IL4_at 9 4 20 20 19 0.45 1.78 1 0 2.3 255 A
IL12_P40_at 9 4 20 20 18 0.45 1.21 0 0 2.3 154 A
TNFa_at 4 3 20 20 18 0.20 0.51 0 0 1.3 -52 A
TCRa_at 2 3 20 20 19 0.10 -0.84 0 0 0.7 -912 A
AFFX-BioB-5_at 2 5 20 20 17 0.10 -0.32 0 0 0.4 -94 A
AFFX-BioB-M_at 2 4 20 20 19 0.10 -0.40 0 0 0.5 -314 A
AFFX-BioB-3_at 4 4 20 20 18 0.20 -0.33 0 0 1.0 11 A
AFFX-BioC-5_at 7 3 20 20 20 0.35 1.17 0 0 2.3 633 A
AFFX-BioC-3_at 6 2 20 20 18 0.30 0.88 0 0 3.0 191 A
AFFX-BioDn-5_at 5 5 20 20 20 0.25 0.61 0 0 1.0 -23 A
AFFX-BioDn-3_at 11 2 20 20 18 0.55 1.87 0 0 5.5 1299 P
AFFX-CreX-5_at 17 0 20 20 19 0.85 5.03 0 0 Undef 4211 P
AFFX-CreX-3_at 18 1 20 20 20 0.90 5.60 1 0 18.0 9497 P
AFFX-BioB-5_st 9 5 20 20 18 0.45 0.79 0 0 1.8 663 A
AFFX-BioB-M_st 4 3 20 20 17 0.20 0.48 0 0 1.3 110 A

Total number of rows: 6584

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided

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