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Sample GSM3800 Query DataSets for GSM3800
Status Public on Jan 29, 2003
Title RH_TH3_44A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44+CD25-CD4-CD8-
Replicate number: 3 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 6 2 19 19 18 0.32 0.71 0 0 3.0 -55 A
IL10_at 8 4 20 20 18 0.40 1.58 1 0 2.0 416 A
GMCSF_at 6 5 20 20 18 0.30 1.03 0 1 1.2 663 A
TNFRII_at 8 1 20 20 19 0.40 0.99 0 0 8.0 427 P
MIP1-B_at 8 2 20 20 20 0.40 1.82 0 0 4.0 3991 P
IL4_at 11 2 20 20 18 0.55 2.65 1 0 5.5 544 P
IL12_P40_at 7 6 20 20 18 0.35 1.50 1 0 1.2 54 A
TNFa_at 5 6 20 20 20 0.25 -0.56 0 0 0.8 -175 A
TCRa_at 13 0 20 20 20 0.65 2.83 0 0 Undef 6578 P
AFFX-BioB-5_at 5 5 20 20 19 0.25 0.27 0 0 1.0 23 A
AFFX-BioB-M_at 3 2 20 20 19 0.15 0.37 0 0 1.5 -129 A
AFFX-BioB-3_at 7 5 20 20 18 0.35 0.47 0 0 1.4 316 A
AFFX-BioC-5_at 14 0 20 20 19 0.70 2.82 0 0 Undef 1393 P
AFFX-BioC-3_at 9 1 20 20 19 0.45 1.69 0 0 9.0 1140 P
AFFX-BioDn-5_at 14 3 20 20 19 0.70 2.52 0 0 4.7 1155 P
AFFX-BioDn-3_at 13 1 20 20 20 0.65 3.44 0 0 13.0 7784 P
AFFX-CreX-5_at 18 0 20 20 20 0.90 6.61 2 0 Undef 14746 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 6.42 5 0 Undef 17932 P
AFFX-BioB-5_st 7 6 20 20 20 0.35 0.91 0 0 1.2 595 A
AFFX-BioB-M_st 7 5 20 20 19 0.35 0.87 0 0 1.4 -46 A

Total number of rows: 6584

Table truncated, full table size 334 Kbytes.




Supplementary data files not provided
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