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Sample GSM376020 Query DataSets for GSM376020
Status Public on Nov 23, 2009
Title mSMC-LTBR-2h-0
Sample type RNA
 
Source name Aortic Smooth Muscle Cells
Organism Mus musculus
Characteristics strain: C57BL/6J, Gender: male, Age: 10-12 weeks, Tissue: aorta
Treatment protocol Cells were feed 24h prior to stimulation, stimuli were added in PBS, Cells were stimulated with 10µg/ml alpha-LTBR
Growth protocol Maintained in DMEM/F12, 10% FCS, feed every 48h
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
Label Biotin/SAPE with Anti Streptavidin signal amplification
Label protocol ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
 
Hybridization protocol 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
Scan protocol Affymetrix Scanner 3000, single scan
Description Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
Data processing GCOS 1.4, scaled to 500
 
Submission date Mar 02, 2009
Last update date Nov 23, 2009
Contact name Andreas Johann Richard Habenicht
E-mail(s) [email protected]
Organization name Ludwig Maximilians Universität München
Department Medicine
Lab Institute for Cardiovascular Disease Prevention
Street address Pettenkoferstraße 9a
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
 
Platform ID GPL1261
Series (1)
GSE15062 Mouse aorta smooth muscle cells differentiate into lymphoid tissue organizers upon combined TNFR1/LTBR NF-kB signaling

Data table header descriptions
ID_REF
VALUE Signal value scaled to 500 by GCOS
ABS_CALL Call by default alpha
DETECTION P-VALUE Detection p-value as calculated by GCOS

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 324.4 P 0.001248
AFFX-BioB-M_at 562.4 P 0.000127
AFFX-BioB-3_at 261.9 P 0.000127
AFFX-BioC-5_at 1116.3 P 0.000095
AFFX-BioC-3_at 1360.6 P 0.000044
AFFX-BioDn-5_at 2470.2 P 0.000127
AFFX-BioDn-3_at 5080 P 0.000147
AFFX-CreX-5_at 12022.8 P 0.000052
AFFX-CreX-3_at 12435 P 0.000044
AFFX-DapX-5_at 3169.3 P 0.000044
AFFX-DapX-M_at 3961.9 P 0.000127
AFFX-DapX-3_at 4554.8 P 0.000044
AFFX-LysX-5_at 332 P 0.000044
AFFX-LysX-M_at 513.7 P 0.000225
AFFX-LysX-3_at 915.2 P 0.000044
AFFX-PheX-5_at 488.5 P 0.00007
AFFX-PheX-M_at 566.3 P 0.000052
AFFX-PheX-3_at 570 P 0.000044
AFFX-ThrX-5_at 571.4 P 0.000147
AFFX-ThrX-M_at 677.5 P 0.000044

Total number of rows: 45101

Table truncated, full table size 1215 Kbytes.




Supplementary file Size Download File type/resource
GSM376020.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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