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GEO accession:
Sample GSM37580
Query DataSets for GSM37580
Status
Public on Dec 21, 2004
Title
GGills
Sample type
RNA
Channel 1
Source name
Gills
Organism
Danio rerio
Extracted molecule
total RNA
Channel 2
Source name
Gills
Organism
Danio rerio
Extracted molecule
total RNA
Description
labeling:
Cy5 = Hypoxia
Cy3 = Normoxia
Submission date
Dec 14, 2004
Last update date
May 27, 2005
Contact name
Christoph Peter Bagowski
E-mail(s)
[email protected]
Phone
++31715274975
Organization name
Leiden University
Street address
City
Leiden
ZIP/Postal code
2333 AL
Country
Netherlands
Platform ID
GPL1743
Series (1)
GSE2069
Differential expression under hypoxia in zebrafish
Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
ratio of medians
Data table
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
mwgzebrafish#00189
3080
3390
60
247
480
376
78
152
152
170
153
90
43
40
0
193
410
346
84
96
96
103
28
27
68
59
0
-0.0306193
1.045
1.093
1.002
2.708
1.106
0.887
32
176
100
192
642
-0.03
95
97
328
314
15362
13108
2.026
10.964
0
0
0
0.979
mwgzebrafish#00001
3340
3390
100
196
249
144
57
151
151
162
97
59
30
15
0
162
179
81
45
101
101
114
77
67
37
12
0
-0.4383073
1.256
1.239
1.003
2.418
1.747
0.656
80
560
100
106
176
-0.439
45
61
98
78
19933
14318
0.897
0.844
0
0
0
0.738
mwgzebrafish#00193
3600
3390
110
375
416
190
45
149
149
157
42
26
92
82
0
393
443
219
49
100
100
109
53
48
91
88
0
-0.3751973
0.778
0.752
0.747
1.831
0.805
0.888
80
656
100
519
610
-0.375
226
293
267
343
33280
35458
6.167
6.302
0
0
0
0.771
mwgzebrafish#00005
3860
3380
110
200
271
234
86
152
152
156
29
18
65
38
0
164
189
102
53
99
99
104
24
23
83
65
0
-0.4383073
1.322
1
0.86
2.871
2.709
0.542
80
656
100
113
209
-0.437
48
65
119
90
21716
15101
3.966
3.542
0
0
0
0.738
mwgzebrafish#00197
4100
3390
100
193
203
46
22
150
150
153
23
15
70
46
0
157
159
39
24
98
98
101
15
14
88
72
0
-0.4560093
0.869
0.784
0.755
2.252
1.044
0.605
80
560
100
102
114
-0.456
43
59
53
61
16220
12696
2.174
3.867
0
0
0
0.729
mwgzebrafish#00009
4350
3400
120
194
206
53
25
155
155
158
28
17
66
31
0
152
157
42
26
101
101
105
26
24
76
49
0
-0.3864683
0.911
0.833
0.802
1.923
1.236
0.543
120
800
100
90
107
-0.387
39
51
51
56
24720
18883
1.714
2
0
0
0
0.765
mwgzebrafish#00201
4600
3390
120
167
182
43
23
153
153
157
31
19
33
16
0
127
136
47
34
101
101
105
21
20
55
31
0
-0.8943223
0.829
0.833
0.801
2.77
1.053
0.262
120
798
100
40
64
-0.893
14
26
29
35
21876
16284
0.806
1.476
0
0
0
0.538
mwgzebrafish#00013
4840
3390
120
209
213
47
22
156
156
165
48
29
54
23
0
178
176
53
30
105
105
115
44
38
64
42
0
-0.4619593
0.803
0.797
0.761
2.005
0.878
0.613
120
798
100
126
128
-0.462
53
73
57
71
25514
21165
1
1.386
0
0
0
0.726
mwgzebrafish#00571
5090
3380
110
221
245
98
40
155
155
161
32
19
67
51
0
188
181
54
29
103
103
139
508
365
0
0
0
-0.3658713
1.154
1
0.958
2.3
1.614
0.561
80
656
100
151
168
-0.365
66
85
90
78
19564
14457
2.625
0.083
0
0
0
0.776
mwgzebrafish#00381
5350
3390
110
335
377
182
48
152
152
223
522
234
6
0
0
269
288
133
46
97
97
158
394
249
8
0
0
0.0894983
1.178
1.148
1.127
1.792
1.385
0.823
80
656
100
355
416
0.089
183
172
225
191
30165
23003
0.295
0.33
0
0
0
1.064
mwgzebrafish#00575
5600
3390
120
194
212
64
30
151
151
157
34
21
55
31
0
146
158
54
34
96
96
102
26
25
71
48
0
-0.2175913
0.984
0.985
0.999
2.416
1.282
0.505
120
799
100
93
123
-0.218
43
50
61
62
25472
18905
1.618
2.154
0
0
0
0.86
mwgzebrafish#00385
5840
3400
130
10380
11883
8824
74
155
155
166
48
28
95
88
0
9733
10845
6808
62
99
99
114
44
38
95
91
0
0.0854253
1.091
1.071
0.86
3.055
1.213
0.905
120
882
100
19859
22474
0.086
10225
9634
11728
10746
1426004
1301353
244.104
243.886
0
0
0
1.061
mwgzebrafish#00579
6100
3390
120
283
302
132
43
152
152
232
1304
562
0
0
0
205
209
79
37
95
95
105
90
85
58
15
0
0.2521733
1.316
1.264
1.109
2.331
1.656
0.664
120
808
100
241
264
0.252
131
110
150
114
36268
25126
0.054
1.156
0
0
0
1.191
mwgzebrafish#00389
6350
3400
130
21615
21107
12371
58
155
155
166
47
28
99
96
0
30106
27401
14376
52
100
100
113
40
35
99
96
0
-0.4839853
0.767
0.762
0.725
1.882
0.792
0.952
120
886
100
51466
48253
-0.484
21460
30006
20952
27301
2532795
3288113
445.553
682.2
0
0
0
0.715
mwgzebrafish#00583
6600
3400
120
269
299
155
51
150
150
157
39
24
80
63
0
231
230
89
38
90
90
98
32
32
88
79
0
-0.2446853
1.064
0.852
0.865
2.109
1.422
0.618
120
794
100
260
289
-0.245
119
141
149
140
35831
27623
3.641
4.125
0
0
0
0.844
mwgzebrafish#00393
6850
3390
100
189
201
56
27
152
152
165
76
46
21
3
0
130
142
41
28
93
93
108
52
48
40
7
0
0.0000003
1
0.894
0.948
2.354
3.568
0.581
80
560
100
74
98
0
37
37
49
49
16117
11358
0.474
0.654
-50
0
0
1
mwgzebrafish#00953
7070
3360
90
161
243
186
76
150
150
156
30
19
34
26
0
101
171
157
91
92
92
99
27
27
38
26
0
0.2892443
1.177
1.271
1.472
2.912
1.212
0.883
52
420
100
20
172
0.29
11
9
93
79
12614
8916
2.9
2.667
-50
0
0
1.222
mwgzebrafish#00761
7330
3390
90
183
191
43
22
150
150
158
39
24
48
7
0
137
140
31
22
94
94
100
26
26
73
30
0
-0.3827023
0.891
0.907
0.82
2.394
0.967
0.363
52
420
100
76
87
-0.382
33
43
41
46
9944
7279
0.846
1.538
0
0
0
0.767
mwgzebrafish#00957
3100
3630
110
328
337
130
38
149
149
158
50
31
87
70
0
209
236
93
39
104
104
112
33
29
90
75
0
0.7697723
1.424
1.411
1.396
1.627
1.575
0.77
80
656
100
284
320
0.77
179
105
188
132
26922
18919
3.58
3.758
0
0
0
1.705
mwgzebrafish#00765
3340
3630
110
338
434
432
99
149
149
159
46
28
87
77
0
308
323
185
57
103
103
111
35
31
85
82
0
-0.1171613
1.295
1.091
1.16
1.956
1.963
0.636
80
656
100
394
505
-0.117
189
205
285
220
34752
25877
5.978
6.057
0
0
0
0.922
Total number of rows:
15173
Table truncated, full table size
3512 Kbytes
.
Supplementary data files not provided
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