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Sample GSM37580 Query DataSets for GSM37580
Status Public on Dec 21, 2004
Title GGills
Sample type RNA
 
Channel 1
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
Channel 2
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
 
Description labeling:
Cy5 = Hypoxia
Cy3 = Normoxia
 
Submission date Dec 14, 2004
Last update date May 27, 2005
Contact name Christoph Peter Bagowski
E-mail(s) [email protected]
Phone ++31715274975
Organization name Leiden University
Street address
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL1743
Series (1)
GSE2069 Differential expression under hypoxia in zebrafish

Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE ratio of medians

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. VALUE Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag PRE_VALUE
mwgzebrafish#00189 3080 3390 60 247 480 376 78 152 152 170 153 90 43 40 0 193 410 346 84 96 96 103 28 27 68 59 0 -0.0306193 1.045 1.093 1.002 2.708 1.106 0.887 32 176 100 192 642 -0.03 95 97 328 314 15362 13108 2.026 10.964 0 0 0 0.979
mwgzebrafish#00001 3340 3390 100 196 249 144 57 151 151 162 97 59 30 15 0 162 179 81 45 101 101 114 77 67 37 12 0 -0.4383073 1.256 1.239 1.003 2.418 1.747 0.656 80 560 100 106 176 -0.439 45 61 98 78 19933 14318 0.897 0.844 0 0 0 0.738
mwgzebrafish#00193 3600 3390 110 375 416 190 45 149 149 157 42 26 92 82 0 393 443 219 49 100 100 109 53 48 91 88 0 -0.3751973 0.778 0.752 0.747 1.831 0.805 0.888 80 656 100 519 610 -0.375 226 293 267 343 33280 35458 6.167 6.302 0 0 0 0.771
mwgzebrafish#00005 3860 3380 110 200 271 234 86 152 152 156 29 18 65 38 0 164 189 102 53 99 99 104 24 23 83 65 0 -0.4383073 1.322 1 0.86 2.871 2.709 0.542 80 656 100 113 209 -0.437 48 65 119 90 21716 15101 3.966 3.542 0 0 0 0.738
mwgzebrafish#00197 4100 3390 100 193 203 46 22 150 150 153 23 15 70 46 0 157 159 39 24 98 98 101 15 14 88 72 0 -0.4560093 0.869 0.784 0.755 2.252 1.044 0.605 80 560 100 102 114 -0.456 43 59 53 61 16220 12696 2.174 3.867 0 0 0 0.729
mwgzebrafish#00009 4350 3400 120 194 206 53 25 155 155 158 28 17 66 31 0 152 157 42 26 101 101 105 26 24 76 49 0 -0.3864683 0.911 0.833 0.802 1.923 1.236 0.543 120 800 100 90 107 -0.387 39 51 51 56 24720 18883 1.714 2 0 0 0 0.765
mwgzebrafish#00201 4600 3390 120 167 182 43 23 153 153 157 31 19 33 16 0 127 136 47 34 101 101 105 21 20 55 31 0 -0.8943223 0.829 0.833 0.801 2.77 1.053 0.262 120 798 100 40 64 -0.893 14 26 29 35 21876 16284 0.806 1.476 0 0 0 0.538
mwgzebrafish#00013 4840 3390 120 209 213 47 22 156 156 165 48 29 54 23 0 178 176 53 30 105 105 115 44 38 64 42 0 -0.4619593 0.803 0.797 0.761 2.005 0.878 0.613 120 798 100 126 128 -0.462 53 73 57 71 25514 21165 1 1.386 0 0 0 0.726
mwgzebrafish#00571 5090 3380 110 221 245 98 40 155 155 161 32 19 67 51 0 188 181 54 29 103 103 139 508 365 0 0 0 -0.3658713 1.154 1 0.958 2.3 1.614 0.561 80 656 100 151 168 -0.365 66 85 90 78 19564 14457 2.625 0.083 0 0 0 0.776
mwgzebrafish#00381 5350 3390 110 335 377 182 48 152 152 223 522 234 6 0 0 269 288 133 46 97 97 158 394 249 8 0 0 0.0894983 1.178 1.148 1.127 1.792 1.385 0.823 80 656 100 355 416 0.089 183 172 225 191 30165 23003 0.295 0.33 0 0 0 1.064
mwgzebrafish#00575 5600 3390 120 194 212 64 30 151 151 157 34 21 55 31 0 146 158 54 34 96 96 102 26 25 71 48 0 -0.2175913 0.984 0.985 0.999 2.416 1.282 0.505 120 799 100 93 123 -0.218 43 50 61 62 25472 18905 1.618 2.154 0 0 0 0.86
mwgzebrafish#00385 5840 3400 130 10380 11883 8824 74 155 155 166 48 28 95 88 0 9733 10845 6808 62 99 99 114 44 38 95 91 0 0.0854253 1.091 1.071 0.86 3.055 1.213 0.905 120 882 100 19859 22474 0.086 10225 9634 11728 10746 1426004 1301353 244.104 243.886 0 0 0 1.061
mwgzebrafish#00579 6100 3390 120 283 302 132 43 152 152 232 1304 562 0 0 0 205 209 79 37 95 95 105 90 85 58 15 0 0.2521733 1.316 1.264 1.109 2.331 1.656 0.664 120 808 100 241 264 0.252 131 110 150 114 36268 25126 0.054 1.156 0 0 0 1.191
mwgzebrafish#00389 6350 3400 130 21615 21107 12371 58 155 155 166 47 28 99 96 0 30106 27401 14376 52 100 100 113 40 35 99 96 0 -0.4839853 0.767 0.762 0.725 1.882 0.792 0.952 120 886 100 51466 48253 -0.484 21460 30006 20952 27301 2532795 3288113 445.553 682.2 0 0 0 0.715
mwgzebrafish#00583 6600 3400 120 269 299 155 51 150 150 157 39 24 80 63 0 231 230 89 38 90 90 98 32 32 88 79 0 -0.2446853 1.064 0.852 0.865 2.109 1.422 0.618 120 794 100 260 289 -0.245 119 141 149 140 35831 27623 3.641 4.125 0 0 0 0.844
mwgzebrafish#00393 6850 3390 100 189 201 56 27 152 152 165 76 46 21 3 0 130 142 41 28 93 93 108 52 48 40 7 0 0.0000003 1 0.894 0.948 2.354 3.568 0.581 80 560 100 74 98 0 37 37 49 49 16117 11358 0.474 0.654 -50 0 0 1
mwgzebrafish#00953 7070 3360 90 161 243 186 76 150 150 156 30 19 34 26 0 101 171 157 91 92 92 99 27 27 38 26 0 0.2892443 1.177 1.271 1.472 2.912 1.212 0.883 52 420 100 20 172 0.29 11 9 93 79 12614 8916 2.9 2.667 -50 0 0 1.222
mwgzebrafish#00761 7330 3390 90 183 191 43 22 150 150 158 39 24 48 7 0 137 140 31 22 94 94 100 26 26 73 30 0 -0.3827023 0.891 0.907 0.82 2.394 0.967 0.363 52 420 100 76 87 -0.382 33 43 41 46 9944 7279 0.846 1.538 0 0 0 0.767
mwgzebrafish#00957 3100 3630 110 328 337 130 38 149 149 158 50 31 87 70 0 209 236 93 39 104 104 112 33 29 90 75 0 0.7697723 1.424 1.411 1.396 1.627 1.575 0.77 80 656 100 284 320 0.77 179 105 188 132 26922 18919 3.58 3.758 0 0 0 1.705
mwgzebrafish#00765 3340 3630 110 338 434 432 99 149 149 159 46 28 87 77 0 308 323 185 57 103 103 111 35 31 85 82 0 -0.1171613 1.295 1.091 1.16 1.956 1.963 0.636 80 656 100 394 505 -0.117 189 205 285 220 34752 25877 5.978 6.057 0 0 0 0.922

Total number of rows: 15173

Table truncated, full table size 3512 Kbytes.




Supplementary data files not provided

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