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Sample GSM36491 Query DataSets for GSM36491
Status Public on Apr 01, 2005
Title Nor:HIF2a rep 3
Sample type RNA
 
Channel 1
Source name HIF2a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 43946
Comparison of HIF2a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) [email protected]
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 3.437 1 1 1 124 47 110 49 77 30 72 28 -50 1.781
1174364_1 -0.482 0.716 1 1 2 274 108 113 47 351 109 75 28 0 -0.482
1175152_1 -0.303 0.811 1 1 3 289 111 114 47 342 100 77 29 0 -0.303
1175940_1 -0.153 0.899 1 1 4 650 209 113 47 813 280 80 34 0 -0.153
1176716_1 0.370 1.292 1 1 5 391 96 111 48 346 139 80 38 0 0.370
1177504_1 0.207 1.154 1 1 6 649 218 115 43 644 343 76 36 0 0.207
1178580_1 -0.896 0.537 1 1 7 280 124 111 41 461 184 75 29 0 -0.896
1179356_1 1.049 1 1 8 159 56 106 53 136 58 74 30 -50 0.069
1180144_1 -0.886 0.541 1 1 9 322 116 109 47 556 110 73 28 0 -0.886
1180932_1 1.041 1 1 10 148 55 109 48 121 39 75 29 -50 0.057
1181708_1 -0.344 0.788 1 1 11 169 63 126 47 162 36 95 43 0 -0.344
1182496_1 1.334 1 1 12 133 52 108 45 102 35 79 33 -50 0.416
1183572_1 -0.264 0.833 1 1 13 188 65 110 45 185 51 70 30 0 -0.264
1184348_1 0.372 1 1 14 120 46 110 47 105 36 72 29 -50 -1.427
1185136_1 1.534 1 1 15 117 49 107 45 79 29 71 27 -50 0.618
1185924_1 0.546 1 1 16 122 46 110 47 99 37 72 27 -50 -0.874
1186700_1 -0.757 0.592 1 1 17 170 62 103 46 214 66 75 30 0 -0.757
1187488_1 1.159 1 1 18 154 60 103 48 127 49 73 28 -50 0.213
1188564_1 -0.854 0.553 1 1 19 417 172 106 45 765 280 75 29 0 -0.854
1189340_1 1.017 1 1 20 138 52 109 47 108 42 73 27 -50 0.024

Total number of rows: 21794

Table truncated, full table size 1448 Kbytes.




Supplementary data files not provided
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