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Sample GSM35967 Query DataSets for GSM35967
Status Public on Nov 24, 2004
Title RENAL_RXF_393
Sample type RNA
 
Channel 1
Source name Cy5-RENAL_RXF_393
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 864 2872 616 4725 0 3679.7 5422.8 0.559449812669646 1.473707096 0.559449812669646
2 856 993 616 887 0 1652.6 1681.6 0.0250970015156662 1.017548106 0.0250970015156662
3 872 6299 608 9300 0 7137.2 9954.9 0.480048622956154 1.394790674 0.480048622956154
4 856 673 616 808 0 1345.9 1617.7 0.265372865133718 1.201946653 0.265372865133718
5 912 110 576 104 0 836.7 830.6 -0.0105565630436378 0.992709454 -0.0105565630436378
6 880 4493 592 6590 0 5370.9 7184.8 0.419784137453892 1.337727383 0.419784137453892
7 904 623 576 961 0 1352.1 1735.9 0.360481984418719 1.283854744 0.360481984418719
8 872 3741 600 3338 0 4531.8 4008.6 -0.176985727635459 0.884549186 -0.176985727635459
9 912 15625 568 24357 0 17280.6 23852.4 0.464981125405964 1.380299295 0.464981125405964
10 872 386 608 617 0 1080.3 1426.6 0.401148873363759 1.320559104 0.401148873363759
11 920 146 568 183 0 878 911.8 0.054496469242681 1.038496583 0.054496469242681
12 872 118 624 162 0 814.5 955.4 0.23019017787416 1.172989564 0.23019017787416
13 904 2462 528 2902 0 3248.2 3554.3 0.129924991107229 1.094236808 0.129924991107229
14 960 317 568 291 0 1071.6 1023.6 -0.06611443358137 0.955207167 -0.06611443358137
15 904 4375 528 4014 0 5222.5 4591.1 -0.185900730952429 0.879100048 -0.185900730952429
16 968 1765 576 2081 0 2578 2816.7 0.127753650273219 1.092591156 0.127753650273219
17 952 5674 536 3253 0 6560.8 3826.7 -0.777770940561943 0.583267284 -0.777770940561943
18 912 169 536 165 0 888.4 853 -0.0586636516362942 0.960153084 -0.0586636516362942
19 976 203 552 136 0 971.7 834.8 -0.219080368232942 0.859112895 -0.219080368232942
20 912 10989 544 267 0 11389.5 847.4 -3.74851748212565 0.074401861 -3.74851748212565

Total number of rows: 9706

Table truncated, full table size 821 Kbytes.




Supplementary data files not provided
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