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Sample GSM35966 Query DataSets for GSM35966
Status Public on Nov 24, 2004
Title RENAL_CAKI_1
Sample type RNA
 
Channel 1
Source name Cy5-RENAL_CAKI_1
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1160 1185 608 1448 0 2358 2044.7 -0.205674532477971 0.867133164 -0.205674532477971
2 1232 1691 768 4351 0 3251.2 4602.2 0.501351373636132 1.415538878 0.501351373636132
3 1160 5658 608 7335 0 8097.6 6687.8 -0.275962675151267 0.825899032 -0.275962675151267
4 1256 696 768 964 0 1888.6 1790.1 -0.0772769920052844 0.947844965 -0.0772769920052844
5 1224 81 632 115 0 1046.6 931.4 -0.168237376566691 0.889929295 -0.168237376566691
6 1128 1603 592 1635 0 2830.3 2148.9 -0.397356633393682 0.759248136 -0.397356633393682
7 1216 440 640 918 0 1540 1675.3 0.121489114844418 1.087857143 0.121489114844418
8 1112 1888 600 1449 0 3113.5 1974.3 -0.657196051616321 0.634109523 -0.657196051616321
9 1184 21125 632 34379 0 27291.2 28619.5 0.0685626364651136 1.048671367 0.0685626364651136
10 1136 157 608 348 0 1072.3 1152.7 0.104308499474747 1.074979017 0.104308499474747
11 1192 232 616 388 0 1205.8 1185.7 -0.0242516019371148 0.983330569 -0.0242516019371148
12 1168 54 624 110 0 971.1 923.7 -0.0721954979764635 0.951189373 -0.0721954979764635
13 1072 3113 592 7097 0 4905.7 6559.4 0.419104844142858 1.337097662 0.419104844142858
14 1224 180 688 336 0 1189.8 1208.3 0.0222596123474543 1.015548832 0.0222596123474543
15 1072 3992 600 3145 0 5736.5 3306 -0.79508405297579 0.576309596 -0.79508405297579
16 1216 2077 672 4380 0 3691 4507.2 0.288219730743905 1.221132484 0.288219730743905
17 1192 7744 632 6969 0 10698.4 6348.9 -0.75281649183847 0.593443879 -0.75281649183847
18 1056 75 584 233 0 901.5 1025 0.18522451288798 1.136993899 0.18522451288798
19 1208 128 632 211 0 1093 1030.4 -0.0850889024264483 0.942726441 -0.0850889024264483
20 1064 9621 584 301 0 11560 818 -3.82089673781483 0.070761246 -3.82089673781483

Total number of rows: 9706

Table truncated, full table size 828 Kbytes.




Supplementary data files not provided
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