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Sample GSM35961 Query DataSets for GSM35961
Status Public on Nov 24, 2004
Title PROSTATE_DU145
Sample type RNA
 
Channel 1
Source name Cy5-PROSTATE_DU145
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1248 1666 744 2928 0 2984.7 3585 0.264387188863263 1.201125741 0.264387188863263
2 1392 977 904 945 0 2225 1968.7 -0.176562052533721 0.884808989 -0.176562052533721
3 1272 7042 736 7831 0 9298.9 7659.6 -0.279791011728893 0.823710331 -0.279791011728893
4 1392 663 936 452 0 1815.3 1571.3 -0.208249337980747 0.865586955 -0.208249337980747
5 1216 219 640 264 0 1134 1144 0.012666411619252 1.008818342 0.012666411619252
6 1280 3368 688 3463 0 4974.4 3878.6 -0.358986523541893 0.779712126 -0.358986523541893
7 1232 728 656 1059 0 1777.4 1891.2 0.0895335479581822 1.064026106 0.0895335479581822
8 1232 3063 680 2563 0 4486.4 3104.7 -0.531104383616549 0.692024786 -0.531104383616549
9 1240 21611 640 25436 0 26381.7 22586.2 -0.224095967730361 0.856131333 -0.224095967730361
10 1232 430 680 449 0 1373.2 1366.5 -0.00705630185495381 0.995120886 -0.00705630185495381
11 1232 375 632 507 0 1323.3 1383.1 0.0637653025696143 1.045190055 0.0637653025696143
12 1232 228 688 326 0 1170.3 1265 0.112258980229037 1.080919422 0.112258980229037
13 1208 2007 568 4128 0 3377.6 4470 0.404276347500893 1.323424917 0.404276347500893
14 1320 202 632 379 0 1225.4 1255.7 0.0352390740470078 1.02472662 0.0352390740470078
15 1184 4643 568 7821 0 6459.6 7567.5 0.228371938940349 1.171512168 0.228371938940349
16 1336 1337 648 2768 0 2706.1 3374.2 0.318330335930326 1.246886663 0.318330335930326
17 1240 5843 512 7871 0 7877.2 7537.8 -0.063539389455943 0.956913624 -0.063539389455943
18 1200 207 568 198 0 1090.3 988.5 -0.141412282002252 0.906631202 -0.141412282002252
19 1264 250 528 241 0 1182.8 984.3 -0.265036148862574 0.832177883 -0.265036148862574
20 1216 9321 568 510 0 10844.4 1047.4 -3.37206582209003 0.096584412 -3.37206582209003

Total number of rows: 9706

Table truncated, full table size 834 Kbytes.




Supplementary data files not provided
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