NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM35957 Query DataSets for GSM35957
Status Public on Nov 24, 2004
Title OVARIAN_OVCAR4
Sample type RNA
 
Channel 1
Source name Cy5-OVARIAN_OVCAR4
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1744 674 1176 1074 0 2192.3 2481.6 0.178825358155103 1.131961867 0.178825358155103
2 1792 710 1632 523 0 2267 2378.4 0.0692069767602619 1.049139832 0.0692069767602619
3 1744 22267 1200 24766 0 24668.3 25274.1 0.0350014221504536 1.024557833 0.0350014221504536
4 1824 741 1656 913 0 2343.4 2811.9 0.26294205717086 1.199923189 0.26294205717086
5 1752 238 1208 281 0 1686.7 1756.7 0.058664440679128 1.041501156 0.058664440679128
6 1856 2281 1728 2219 0 3910.2 4175.9 0.0948447627813997 1.067950488 0.0948447627813997
7 1784 354 1080 646 0 1861.1 1982.8 0.0913835878019248 1.065391435 0.0913835878019248
8 1752 2732 1208 4501 0 4338 5901.1 0.443953853659719 1.36032734 0.443953853659719
9 1800 32343 1112 38638 0 34851.5 38941.9 0.160102525246987 1.117366541 0.160102525246987
10 1768 537 1200 712 0 2051.8 2147.9 0.0660367170914479 1.046836924 0.0660367170914479
11 1800 300 1120 354 0 1788.9 1730.3 -0.0480505488201519 0.967242439 -0.0480505488201519
12 1776 353 1144 115 0 1786.9 1500 -0.252496398788297 0.83944261 -0.252496398788297
13 1696 4995 1280 8747 0 6657.5 10077.5 0.59808535442501 1.513706346 0.59808535442501
14 1736 213 1592 276 0 1693.7 2149.6 0.343889869686246 1.269173998 0.343889869686246
15 1712 5160 1288 3247 0 6674.6 4669.1 -0.515536893413291 0.699532556 -0.515536893413291
16 1760 1467 1664 1857 0 2997.3 3790.9 0.33887690990348 1.264771628 0.33887690990348
17 1712 9150 1280 8029 0 11029.3 9167.8 -0.266693752915102 0.83122229 -0.266693752915102
18 1760 269 1704 65 0 1759.9 2039.5 0.212722051632564 1.158872663 0.212722051632564
19 1768 241 936 212 0 1661.3 1388.2 -0.259097187346991 0.835610666 -0.259097187346991
20 1728 28332 1312 432 0 29761.3 1761.5 -4.07856115857136 0.059187603 -4.07856115857136

Total number of rows: 9706

Table truncated, full table size 845 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap