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Sample GSM35949 Query DataSets for GSM35949
Status Public on Nov 24, 2004
Title NSCLC_HOP92
Sample type RNA
 
Channel 1
Source name Cy5-NSCLC_HOP92
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 2048 675 1344 169 0 2098.4 1963.4 -0.0959355919205316 0.935665269 -0.0959355919205316
2 2184 255 1840 56 0 1896.7 2438.1 0.362265793493389 1.285443138 0.362265793493389
3 2024 8767 1312 7494 0 10092.3 9415.6 -0.100130059582514 0.932948882 -0.100130059582514
4 2152 417 1832 -15 0 1999.3 2334.7 0.223742213267457 1.167758716 0.223742213267457
5 1872 -78 2304 -565 0 1351.9 2307.7 0.771467246992624 1.707004956 0.771467246992624
6 1976 2628 1176 1032 0 3780.4 2689 -0.491469138300305 0.711300391 -0.491469138300305
7 1840 1072 2008 933 0 2362.5 3625 0.617666665425726 1.534391534 0.617666665425726
8 1992 1417 1184 1005 0 2741 2722.4 -0.00982327235490465 0.993214155 -0.00982327235490465
9 1832 29073 1856 28833 0 30796.6 30797 1.87376015092528e-005 1.000012988 1.87376015092528e-005
10 2024 7843 1200 7625 1 9227.9 9436.2 1.02257285 0.0322036271179951
11 1824 273 1680 109 0 1604.6 2338 0.543061227727463 1.45706095 0.543061227727463
12 2008 -67 1200 -44 0 1425.6 1574 0.142866299182364 1.104096521 0.142866299182364
13 1840 3036 952 5717 0 4340.3 7492.1 0.787575391235991 1.726171002 0.787575391235991
14 1720 -9 832 -12 0 1234.5 1136.5 -0.119329152105325 0.920615634 -0.119329152105325
15 1864 3511 952 1907 0 4563.2 3367.6 -0.438325099318791 0.737990884 -0.438325099318791
16 1736 1640 840 2344 0 2781.8 3864.1 0.474113730335732 1.389064634 0.474113730335732
17 1552 7541 1096 6400 0 8400.8 8113.7 -0.0501667608169905 0.965824683 -0.0501667608169905
18 1872 -17 936 84 0 1350.7 1400.9 0.0526466985471698 1.037165914 0.0526466985471698
19 1600 195 1064 68 0 1311 1550 0.241600529879345 1.182303585 0.241600529879345
20 1904 12869 936 109 0 12549 1230.2 -3.35060761285951 0.098031716 -3.35060761285951

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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