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Sample GSM35945 Query DataSets for GSM35945
Status Public on Nov 24, 2004
Title MELANOMA_UACC62
Sample type RNA
 
Channel 1
Source name Cy5-MELANOMA_UACC62
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1088 1185 832 1114 0 2041.6 2166.6 0.0857325918665721 1.061226489 0.0857325918665721
2 1168 1306 904 2244 0 2339.8 3328.6 0.508530293789574 1.422600222 0.508530293789574
3 1072 5043 824 10228 0 6594.7 10248.1 0.635977522616108 1.553990326 0.635977522616108
4 1192 721 936 597 0 1626.1 1803.5 0.149383442344642 1.109095382 0.149383442344642
5 1000 127 776 67 0 892.4 1064.6 0.254549052739346 1.192962797 0.254549052739346
6 1040 3536 792 5509 0 4835.5 5962.9 0.302349068053013 1.233150657 0.302349068053013
7 1000 853 784 689 0 1558.3 1751.6 0.168700350578193 1.124045434 0.168700350578193
8 1096 2362 808 2655 0 3424.2 3497.2 0.0304333349880955 1.021318848 0.0304333349880955
9 968 18666 776 17339 0 21958.7 16197.2 -0.439048208674212 0.73762108 -0.439048208674212
10 1112 373 816 542 0 1201.1 1678.9 0.483160031525077 1.397802015 0.483160031525077
11 976 238 776 238 0 957.8 1285.3 0.424308795824089 1.341929422 0.424308795824089
12 1128 109 824 89 0 976.1 1157 0.245288002013311 1.185329372 0.245288002013311
13 1304 2389 712 4421 0 3775.9 5020.4 0.410981757765596 1.329590296 0.410981757765596
14 1416 440 776 274 0 1495.9 1302.8 -0.19939811055085 0.870913831 -0.19939811055085
15 1296 4352 712 1180 0 5536.8 1930 -1.52045156344074 0.348576795 -1.52045156344074
16 1432 1918 784 3499 0 3366.9 4261.5 0.339940459663851 1.265704357 0.339940459663851
17 1232 5894 688 5754 0 7655 5996.9 -0.352185461871697 0.783396473 -0.352185461871697
18 1304 133 704 137 0 1133.7 1066 -0.088831485960778 0.940284026 -0.088831485960778
19 1216 231 688 124 0 1141.7 1029.2 -0.149660247059939 0.901462731 -0.149660247059939
20 1304 10218 704 274 0 11353.2 992.5 -3.51588807528879 0.087420287 -3.51588807528879

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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