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Sample GSM35935 Query DataSets for GSM35935
Status Public on Nov 24, 2004
Title LEUKEMIA_MOLT4
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_MOLT4
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1088 1663 944 2263 0 2628.7 3356.2 0.352479186816567 1.276752768 0.352479186816567
2 1200 1307 992 1181 0 2281.1 2388.1 0.0661335562225433 1.046907194 0.0661335562225433
3 1072 5217 936 9890 0 6525.5 10433.7 0.677090503592832 1.598911961 0.677090503592832
4 1208 586 992 430 0 1488.5 1713.9 0.2034237145686 1.151427612 0.2034237145686
5 1040 156 872 46 0 956.2 1148.2 0.263989650163061 1.200794813 0.263989650163061
6 1072 3296 872 8154 0 4539.4 8685.2 0.936057451152052 1.913292506 0.936057451152052
7 1056 883 896 1116 0 1701.1 2293.3 0.430957141523328 1.348127682 0.430957141523328
8 1104 2014 888 4535 0 3137.1 5390 0.780853755287372 1.718147334 0.780853755287372
9 1064 18047 896 15586 0 21171.2 14878.1 -0.508912744264391 0.702751852 -0.508912744264391
10 1096 408 872 225 0 1199.7 1375.2 0.196967763396201 1.146286572 0.196967763396201
11 1056 232 888 244 0 1025.1 1422.4 0.472562575470812 1.387571944 0.472562575470812
12 1080 153 864 104 0 984.2 1212.7 0.301199275844087 1.232168258 0.301199275844087
13 1264 2830 736 2827 0 4096.6 3560.8 -0.202225626272283 0.869208612 -0.202225626272283
14 1400 247 800 231 0 1315.5 1290.8 -0.0273457659357011 0.981223869 -0.0273457659357011
15 1240 4344 728 585 0 5245.2 1397.8 -1.90783983327058 0.266491268 -1.90783983327058
16 1408 1947 800 2092 0 3239.6 2995 -0.113259689324328 0.924496851 -0.113259689324328
17 1224 4790 712 6656 0 6286 7049.2 0.165317265931807 1.121412663 0.165317265931807
18 1264 254 728 83 0 1210.7 1016.9 -0.251663608455683 0.839927315 -0.251663608455683
19 1232 195 712 110 0 1139.4 1029.5 -0.1463304810646 0.903545726 -0.1463304810646
20 1304 10874 744 214 0 11986.3 973.3 -3.62235802014899 0.081201038 -3.62235802014899

Total number of rows: 9706

Table truncated, full table size 828 Kbytes.




Supplementary data files not provided
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