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Sample GSM35930 Query DataSets for GSM35930
Status Public on Nov 24, 2004
Title LEUKEMIA_CCRF_CEM
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_CCRF_CEM
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 2192 626 792 171 0 2185.8 1241.6 -0.815960938010024 0.568030012 -0.815960938010024
2 1480 149 784 207 0 1209.7 1334.5 0.141649995009711 1.103166074 0.141649995009711
3 2744 2889 808 6524 0 6405.1 6448.1 0.00965302271989311 1.0067134 0.00965302271989311
4 1424 352 768 387 0 1337.1 1534.1 0.198285160825219 1.147333782 0.198285160825219
5 1808 180 800 198 0 1492.7 1329.2 -0.167366046532029 0.890466939 -0.167366046532029
6 3600 1379 880 5405 0 5574.1 5614 0.0102901787145735 1.007158106 0.0102901787145735
7 1832 644 808 1793 0 2289.9 2812.4 0.296517202574338 1.228175903 0.296517202574338
8 4352 2796 936 1948 1 7637.3 2699.2 0.35342333 -1.50053081740765
9 1816 12745 808 15275 0 17394.3 13463.3 -0.369582548979522 0.774006427 -0.369582548979522
10 4384 4901 936 266 1 9281.5 1202.4 0.129548026 -2.94844106240068
11 1800 229 808 300 0 1541.3 1458.6 -0.0795633979283319 0.946343995 -0.0795633979283319
12 1560 161 784 311 0 1287.2 1464 0.185679322713635 1.137352393 0.185679322713635
13 1504 1943 704 3646 0 3550.5 4223.3 0.250348524616112 1.189494437 0.250348524616112
14 2528 150 784 99 0 2045.3 1156.2 -0.822921491435244 0.565296045 -0.822921491435244
15 1480 1366 704 391 0 2264.6 1376.2 -0.718566098992358 0.607701139 -0.718566098992358
16 2432 1009 784 2496 0 3443.7 3277.4 -0.0714077049376147 0.951708918 -0.0714077049376147
17 1664 2612 752 5315 0 4706.5 5512.1 0.227947466259868 1.171167534 0.227947466259868
18 1480 131 680 247 0 1193.1 1251.7 0.0691738593221519 1.049115749 0.0691738593221519
19 1664 102 752 173 0 1312 1245.1 -0.0755061037155178 0.949009146 -0.0755061037155178
20 1496 10716 688 264 0 12256.6 948.5 -3.69176724991904 0.077386877 -3.69176724991904

Total number of rows: 9706

Table truncated, full table size 828 Kbytes.




Supplementary data files not provided
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