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Sample GSM35925 Query DataSets for GSM35925
Status Public on Nov 24, 2004
Title COLON_HCT116
Sample type RNA
 
Channel 1
Source name Cy5-COLON_HCT116
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 968 5736 1616 6706 0 6985.9 7986.2 0.193063210272952 1.143188422 0.193063210272952
2 1040 506 1856 860 0 1683.5 2494.1 0.567055588992027 1.481496881 0.567055588992027
3 968 6853 1576 10883 0 8324.1 11706 0.491881981744732 1.406278156 0.491881981744732
4 1032 415 1880 288 0 1598.3 1962.7 0.296301446324149 1.227992242 0.296301446324149
5 864 151 1288 120 0 1167.6 1223.9 0.0679395700169711 1.048218568 0.0679395700169711
6 952 2973 1536 3482 0 4133.2 4765.3 0.205307866975389 1.152932353 0.205307866975389
7 864 633 1312 519 0 1671 1640.4 -0.0266640849273923 0.981687612 -0.0266640849273923
8 960 7904 1568 9549 0 9439.1 10439.7 0.145359041227891 1.106005869 0.145359041227891
9 856 27181 1312 13114 0 30214.9 13386.2 -1.17451369300983 0.443033073 -1.17451369300983
10 968 228 1592 114 0 1370.1 1489.2 0.120256325137898 1.086927961 0.120256325137898
11 856 297 1304 307 0 1326.2 1400.6 0.0787466328606772 1.056100136 0.0787466328606772
12 960 107 1592 105 0 1228.3 1474.2 0.263269295935651 1.200195392 0.263269295935651
13 888 1887 1272 4307 0 2934.8 5275.2 0.845963601919393 1.797464904 0.845963601919393
14 936 185 1400 214 0 1290.4 1402.1 0.119770904367295 1.086562306 0.119770904367295
15 896 5809 1272 3432 0 6983.5 4516.4 -0.628777003547458 0.646724422 -0.628777003547458
16 952 1440 1408 2904 0 2545.5 4052 0.670685108225245 1.591828717 0.670685108225245
17 824 5569 1048 5757 0 6661.7 6530.5 -0.028696932247999 0.980305327 -0.028696932247999
18 904 161 1272 220 0 1227 1295 0.0778168490458113 1.055419723 0.0778168490458113
19 856 159 1080 172 0 1163.9 1091.8 -0.0922585083827915 0.938053097 -0.0922585083827915
20 904 7876 1296 906 0 9249.5 2090.2 -2.1457343853898 0.225979783 -2.1457343853898

Total number of rows: 9706

Table truncated, full table size 832 Kbytes.




Supplementary data files not provided
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