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Sample GSM35918 Query DataSets for GSM35918
Status Public on Nov 24, 2004
Title CNS_SF295
Sample type RNA
 
Channel 1
Source name Cy5-CNS_SF295
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1704 2563 1872 2019 0 3922.6 4232.7 0.109768012557245 1.079054709 0.109768012557245
2 2256 1463 2512 640 0 3401 3446.7 0.0192567257768469 1.013437224 0.0192567257768469
3 1696 7973 1848 7793 0 9133.6 10206.1 0.160176168350224 1.117423579 0.160176168350224
4 2336 657 2616 128 0 2727.9 3010.7 0.142308199317076 1.103669489 0.142308199317076
5 1464 -37 1376 -137 0 1279.8 1381.5 0.1103171899821 1.079465541 0.1103171899821
6 1688 5184 1784 3832 0 6300.7 6125.2 -0.0407551674560908 0.972145952 -0.0407551674560908
7 1472 695 1432 457 0 1970 2077.9 0.0769305963361236 1.054771574 0.0769305963361236
8 1688 3245 1808 3271 0 4511 5554.1 0.300105866090875 1.231234759 0.300105866090875
9 1472 13815 1464 13570 0 14399.7 15960.4 0.148458053085809 1.108384202 0.148458053085809
10 1696 538 1776 466 0 2035.4 2460.8 0.273815065574551 1.209000688 0.273815065574551
11 1448 85 1408 84 0 1383.1 1653.7 0.257792068359036 1.195647459 0.257792068359036
12 1728 119 1816 41 0 1675.7 2046.9 0.288676735130355 1.221519365 0.288676735130355
13 1704 1555 1456 1236 0 2970.7 2953.3 -0.00847500482774506 0.994142795 -0.00847500482774506
14 2024 82 1496 139 0 1910.7 1802.1 -0.0844222078964008 0.943162192 -0.0844222078964008
15 1688 4050 1456 3048 0 5244.3 4928 -0.0897479614470194 0.939686898 -0.0897479614470194
16 2024 1375 1496 968 0 3098 2703.4 -0.19656215203042 0.872627502 -0.19656215203042
17 1216 3120 984 2880 0 3986 4203.3 0.0765807182935245 1.054515805 0.0765807182935245
18 1664 151 1448 28 0 1642.1 1631.4 -0.0094314299934837 0.993483953 -0.0094314299934837
19 1232 88 1000 0 0 1176.8 1121.7 -0.0691822748710027 0.95317811 -0.0691822748710027
20 1680 5170 1448 373 0 6275.3 1987.8 -1.65851182306739 0.316765732 -1.65851182306739

Total number of rows: 9706

Table truncated, full table size 839 Kbytes.




Supplementary data files not provided
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