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Sample GSM35911 Query DataSets for GSM35911
Status Public on Nov 24, 2004
Title BREAST_MDA_MB231
Sample type RNA
 
Channel 1
Source name Cy5-BREAST_MDA_MB231
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1584 967 1496 2095 0 2273.8 4028.7 0.825209015382159 1.771791714 0.825209015382159
2 1368 607 1376 487 0 1679.4 2190.9 0.383577743874346 1.304573062 0.383577743874346
3 1584 9941 1520 9036 0 12017.6 10123.3 -0.247469151250878 0.842372853 -0.247469151250878
4 1360 497 1368 537 0 1578.1 2241.6 0.506340232848436 1.420442304 0.506340232848436
5 1840 4 1176 59 0 1585.8 1436.1 -0.143054619421488 0.905599697 -0.143054619421488
6 1600 2763 1520 3133 0 4104.9 4945.6 0.268798482900482 1.204804015 0.268798482900482
7 1792 968 1176 3181 0 2507.9 4795 0.935050991938333 1.911958212 0.935050991938333
8 1624 1979 1544 981 0 3210.3 2833.8 -0.179970181046414 0.882721241 -0.179970181046414
9 1784 25929 1176 23758 0 30964.1 22316 -0.472518057538247 0.720705591 -0.472518057538247
10 1616 305 1520 306 0 1632.4 2148.8 0.396536593812965 1.316344033 0.396536593812965
11 1800 194 1184 115 0 1701.3 1522.5 -0.160195334036568 0.894903897 -0.160195334036568
12 1600 -52 1488 -58 0 1334 1659.4 0.314903024769935 1.243928036 0.314903024769935
13 1504 3652 1224 6709 0 5052.3 8095.9 0.680251162408944 1.6024187 0.680251162408944
14 1328 113 1016 86 0 1258.8 1261.5 0.00309112270247515 1.0021449 0.00309112270247515
15 1472 5433 1232 2108 0 6536.9 3528.1 -0.889715173489387 0.539720663 -0.889715173489387
16 1312 2572 976 3170 0 3607.7 4463.5 0.30709605031 1.237214846 0.30709605031
17 1864 4075 1064 2085 0 5560.5 3363.4 -0.725294252069603 0.604873662 -0.725294252069603
18 1424 146 1200 -25 0 1365.4 1351.1 -0.0151891984550765 0.989526879 -0.0151891984550765
19 1864 78 1056 42 0 1677.6 1271 -0.400434735336157 0.757629948 -0.400434735336157
20 1424 23319 1192 0 0 23664.4 1246.3 -4.24699506488763 0.052665607 -4.24699506488763

Total number of rows: 9706

Table truncated, full table size 839 Kbytes.




Supplementary data files not provided
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