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Sample GSM35909 Query DataSets for GSM35909
Status Public on Nov 24, 2004
Title BREAST_MCF7D_REPRO
Sample type RNA
 
Channel 1
Source name Cy5-BREAST_MCF7D_REPRO
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1592 1825 1216 3384 0 3540.3 4439.8 0.326623070900624 1.254074513 0.326623070900624
2 1736 434 1680 506 0 2014 2355.3 0.225847147936767 1.169463754 0.225847147936767
3 1584 7822 1192 23262 0 11634.9 19769.4 0.764810274721415 1.699146533 0.764810274721415
4 1752 303 1712 210 0 1862 2121.2 0.188027581015612 1.139205156 0.188027581015612
5 1752 227 1544 27 0 1728.9 1798.2 0.0566990641918776 1.04008329 0.0566990641918776
6 1528 1919 1120 3880 0 3583.3 4809.8 0.424688072156243 1.342282254 0.424688072156243
7 1728 746 1472 778 0 2345.7 2373.1 0.0167543816214339 1.011680948 0.0167543816214339
8 1544 1450 1144 2652 0 3032.7 3747.6 0.305364183924818 1.235730537 0.305364183924818
9 1680 26168 1408 24318 0 29944.1 23925.2 -0.323740785687411 0.798995462 -0.323740785687411
10 1544 298 1144 219 0 1569.3 1599.8 0.027770381018936 1.019435417 0.027770381018936
11 1688 424 1376 343 0 1889.4 1921.5 0.0243048124088541 1.01698952 0.0243048124088541
12 1544 149 1144 94 0 1427 1468.8 0.0416526284289324 1.029292221 0.0416526284289324
13 1496 2991 952 5307 0 4778.8 5876.8 0.29838241187745 1.229764795 0.29838241187745
14 1600 130 1080 141 0 1458.7 1448.1 -0.0105219722421084 0.992733256 -0.0105219722421084
15 1480 1796 952 1085 0 3158.4 2112.8 -0.580037688127609 0.668946302 -0.580037688127609
16 1624 1066 1088 1967 0 2642.7 3109.6 0.234716353774792 1.17667537 0.234716353774792
17 1648 4169 1064 5870 0 6320.6 6381.6 0.0138566671210815 1.009650983 0.0138566671210815
18 1472 185 952 148 0 1389 1312.2 -0.0820589735975552 0.944708423 -0.0820589735975552
19 1632 220 1040 191 0 1567.8 1454.2 -0.108515830344215 0.927541778 -0.108515830344215
20 1496 10198 968 996 0 12294.4 1868.1 -2.71835773912641 0.151947228 -2.71835773912641

Total number of rows: 9706

Table truncated, full table size 837 Kbytes.




Supplementary data files not provided
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