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Sample GSM35908 Query DataSets for GSM35908
Status Public on Nov 24, 2004
Title BREAST_MCF7A_REPRO
Sample type RNA
 
Channel 1
Source name Cy5-BREAST_MCF7A_REPRO
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1280 1057 976 1217 0 2126.8 2409.8 0.180229044532124 1.133063758 0.180229044532124
2 968 369 968 344 0 1163.8 1507.3 0.373123435346082 1.295153806 0.373123435346082
3 1296 8418 992 20149 0 9909.9 20723.1 1.06429742965251 2.091151273 1.06429742965251
4 984 358 984 156 0 1162 1316.6 0.180207034635035 1.133046472 0.180207034635035
5 1104 164 728 28 0 1102.8 869.3 -0.343245123486997 0.788266231 -0.343245123486997
6 1304 4597 992 7334 0 5726.5 8579.7 0.583273560262729 1.498245001 0.583273560262729
7 1144 513 712 430 0 1447.2 1307.6 -0.146343031212332 0.903537866 -0.146343031212332
8 1296 3198 1008 3176 0 4293.2 4379.7 0.0287786686354381 1.020148141 0.0287786686354381
9 1160 28168 712 12537 0 30373.4 12793 -1.24745379394499 0.42119091 -1.24745379394499
10 1272 474 992 46 0 1522 1190.8 -0.354037232177102 0.78239159 -0.354037232177102
11 1176 165 712 75 0 1162.6 907.7 -0.357067351184729 0.780750043 -0.357067351184729
12 1272 146 984 -35 0 1226.1 1097.5 -0.159855709398737 0.895114591 -0.159855709398737
13 1256 3198 1008 5800 0 4304.3 7044.8 0.710780115837029 1.636688893 0.710780115837029
14 912 161 1000 32 0 929.1 1191.8 0.359236363536723 1.282746744 0.359236363536723
15 1248 2051 1008 971 0 3011.7 2167.8 -0.474346407621347 0.719792808 -0.474346407621347
16 912 1988 1008 2691 0 2714.5 3951.8 0.54182345001622 1.455811383 0.54182345001622
17 1288 2982 912 2334 0 4033.7 3436.1 -0.231331766456349 0.851848179 -0.231331766456349
18 1232 222 1016 76 0 1260 1260.1 0.00011449494853437 1.000079365 0.00011449494853437
19 1296 67 896 35 0 1178.6 1076.7 -0.130457842161622 0.91354149 -0.130457842161622
20 1232 18383 1024 517 0 18955.5 1594.6 -3.57135002407197 0.084123342 -3.57135002407197

Total number of rows: 9706

Table truncated, full table size 833 Kbytes.




Supplementary data files not provided
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