|
| Status |
Public on May 10, 2019 |
| Title |
SmarterUL_NexteraXT_1ng_130pg C1 |
| Sample type |
SRA |
| |
|
| Source name |
SmarterUL_NexteraXT_1ng_130pg
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Mixture 75% A + 25% B (C)
tissue source: Tissue mixture
protocol: Kit SMARTer Ultra-Low + Nextera XT
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA libraries were prepared for sequencing according to the kit manufacturer instructions
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
R528_RA_B00GTJ8_7_*_C9G6HACXX.IND233
|
| Data processing |
Illumina software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, then mapped to hg19 whole genome using tophat2 with default parameters
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include raw gene counts values for all samples
|
| |
|
| Submission date |
Dec 20, 2018 |
| Last update date |
May 10, 2019 |
| Contact name |
Eric Bonnet |
| E-mail(s) |
[email protected]
|
| Organization name |
CNRGH
|
| Lab |
Computational genomics
|
| Street address |
2 rue Gaston Crémieux
|
| City |
Evry |
| ZIP/Postal code |
91000 |
| Country |
France |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE124198 |
Comprehensive analysis of RNA-seq kits for standard, low and ultra-low quantity samples |
|
| Relations |
| BioSample |
SAMN10620665 |
| SRA |
SRX5170716 |
