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Sample GSM349770 Query DataSets for GSM349770
Status Public on Feb 20, 2009
Title SLE10-TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit from SLE patient
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, SLE10-TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1331.85 P 0.000856509
AFFX-BioB-M_at 1835.79 P 0.00010954
AFFX-BioB-3_at 848.7 P 4.42873e-05
AFFX-BioC-5_at 3183.04 P 0.000753643
AFFX-BioC-3_at 4088.74 P 4.42873e-05
AFFX-BioDn-5_at 6828.85 P 4.42873e-05
AFFX-BioDn-3_at 15773.9 P 0.000169227
AFFX-CreX-5_at 30724.8 P 5.16732e-05
AFFX-CreX-3_at 40117 P 4.42873e-05
AFFX-DapX-5_at 73.7616 A 0.108979
AFFX-DapX-M_at 65.0533 A 0.5
AFFX-DapX-3_at 14.1067 A 0.963431
AFFX-LysX-5_at 49.7281 A 0.425962
AFFX-LysX-M_at 45.8925 A 0.617401
AFFX-LysX-3_at 57.2329 P 0.0284573
AFFX-PheX-5_at 23.5083 A 0.834139
AFFX-PheX-M_at 39.8958 A 0.83416
AFFX-PheX-3_at 30.4355 A 0.58862
AFFX-ThrX-5_at 8.84252 A 0.9273
AFFX-ThrX-M_at 10.5801 A 0.843268

Total number of rows: 54675

Table truncated, full table size 1620 Kbytes.




Supplementary file Size Download File type/resource
GSM349770.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM349770.CHP.gz 295.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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