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Sample GSM349769 Query DataSets for GSM349769
Status Public on Feb 20, 2009
Title SLE9-TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit from SLE patient
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, SLE9-TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2897.01 P 0.000662269
AFFX-BioB-M_at 3355.67 P 6.02111e-05
AFFX-BioB-3_at 2246.15 P 5.16732e-05
AFFX-BioC-5_at 5844.25 P 0.000126798
AFFX-BioC-3_at 7292.4 P 4.42873e-05
AFFX-BioDn-5_at 13118.1 P 4.42873e-05
AFFX-BioDn-3_at 26820.6 P 6.02111e-05
AFFX-CreX-5_at 70587.3 P 4.42873e-05
AFFX-CreX-3_at 90691.1 P 4.42873e-05
AFFX-DapX-5_at 80.0146 A 0.440646
AFFX-DapX-M_at 49.8431 A 0.686292
AFFX-DapX-3_at 87.9172 A 0.544587
AFFX-LysX-5_at 25.7531 A 0.631562
AFFX-LysX-M_at 123.899 A 0.368427
AFFX-LysX-3_at 145.645 A 0.156732
AFFX-PheX-5_at 15.1546 A 0.90441
AFFX-PheX-M_at 167.941 A 0.659339
AFFX-PheX-3_at 77.3535 A 0.470241
AFFX-ThrX-5_at 41.3554 A 0.749204
AFFX-ThrX-M_at 16.0247 A 0.922016

Total number of rows: 54675

Table truncated, full table size 1605 Kbytes.




Supplementary file Size Download File type/resource
GSM349769.CEL.gz 4.4 Mb (ftp)(http) CEL
GSM349769.CHP.gz 297.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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