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Sample GSM349767 Query DataSets for GSM349767
Status Public on Feb 20, 2009
Title SLE7-TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit from SLE patient
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, SLE7-TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1840.64 P 0.000146581
AFFX-BioB-M_at 2762.76 P 4.42873e-05
AFFX-BioB-3_at 1886.04 P 4.42873e-05
AFFX-BioC-5_at 4381.28 P 7.00668e-05
AFFX-BioC-3_at 6913.54 P 4.42873e-05
AFFX-BioDn-5_at 10962.4 P 4.42873e-05
AFFX-BioDn-3_at 20215.8 P 4.42873e-05
AFFX-CreX-5_at 56336.3 P 5.16732e-05
AFFX-CreX-3_at 67717.1 P 4.42873e-05
AFFX-DapX-5_at 63.5854 A 0.327065
AFFX-DapX-M_at 59.5026 A 0.686277
AFFX-DapX-3_at 22.0592 A 0.860518
AFFX-LysX-5_at 45.5466 A 0.116031
AFFX-LysX-M_at 18.0242 A 0.804734
AFFX-LysX-3_at 72.5747 A 0.156732
AFFX-PheX-5_at 26.0009 A 0.313723
AFFX-PheX-M_at 14.0389 A 0.937087
AFFX-PheX-3_at 26.913 A 0.852082
AFFX-ThrX-5_at 28.2005 A 0.794268
AFFX-ThrX-M_at 17.7548 A 0.617401

Total number of rows: 54675

Table truncated, full table size 1620 Kbytes.




Supplementary file Size Download File type/resource
GSM349767.CEL.gz 4.6 Mb (ftp)(http) CEL
GSM349767.CHP.gz 295.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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