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Sample GSM349745 Query DataSets for GSM349745
Status Public on Feb 20, 2009
Title BC8 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC8 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3457.76 P 0.000389797
AFFX-BioB-M_at 3051.04 P 7.00668e-05
AFFX-BioB-3_at 2122.27 P 5.16732e-05
AFFX-BioC-5_at 5408.34 P 9.4506e-05
AFFX-BioC-3_at 5779.45 P 5.16732e-05
AFFX-BioDn-5_at 11725 P 4.42873e-05
AFFX-BioDn-3_at 24739.4 P 4.42873e-05
AFFX-CreX-5_at 64026.5 P 4.42873e-05
AFFX-CreX-3_at 87598.8 P 4.42873e-05
AFFX-DapX-5_at 171.807 A 0.175328
AFFX-DapX-M_at 34.7322 A 0.804734
AFFX-DapX-3_at 12.3563 A 0.971543
AFFX-LysX-5_at 88.829 A 0.41138
AFFX-LysX-M_at 117.051 A 0.834139
AFFX-LysX-3_at 192.225 A 0.131361
AFFX-PheX-5_at 44.2183 A 0.941556
AFFX-PheX-M_at 48.1127 A 0.724854
AFFX-PheX-3_at 78.346 A 0.804734
AFFX-ThrX-5_at 67.9134 A 0.544587
AFFX-ThrX-M_at 101.905 A 0.737173

Total number of rows: 54675

Table truncated, full table size 1601 Kbytes.




Supplementary file Size Download File type/resource
GSM349745.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM349745.CHP.gz 295.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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