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Sample GSM349743 Query DataSets for GSM349743
Status Public on Feb 20, 2009
Title BC6 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC6 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1692.79 P 0.000581214
AFFX-BioB-M_at 1927.76 P 7.00668e-05
AFFX-BioB-3_at 933.285 P 4.42873e-05
AFFX-BioC-5_at 3552.93 P 0.000169227
AFFX-BioC-3_at 4356.06 P 5.16732e-05
AFFX-BioDn-5_at 7888.6 P 4.42873e-05
AFFX-BioDn-3_at 16478.3 P 0.000126798
AFFX-CreX-5_at 35006.7 P 4.42873e-05
AFFX-CreX-3_at 46905.6 P 4.42873e-05
AFFX-DapX-5_at 76.4472 A 0.313723
AFFX-DapX-M_at 51.7588 A 0.760956
AFFX-DapX-3_at 17.2584 A 0.9273
AFFX-LysX-5_at 37.288 A 0.58862
AFFX-LysX-M_at 93.8397 A 0.645547
AFFX-LysX-3_at 86.5519 A 0.147939
AFFX-PheX-5_at 11.9317 A 0.941556
AFFX-PheX-M_at 14.6328 A 0.860518
AFFX-PheX-3_at 165.726 A 0.216524
AFFX-ThrX-5_at 15.0501 A 0.868639
AFFX-ThrX-M_at 66.2621 A 0.216524

Total number of rows: 54675

Table truncated, full table size 1617 Kbytes.




Supplementary file Size Download File type/resource
GSM349743.CEL.gz 4.6 Mb (ftp)(http) CEL
GSM349743.CHP.gz 295.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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