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Sample GSM349734 Query DataSets for GSM349734
Status Public on Feb 20, 2009
Title BC3 TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC3 TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1897.86 P 0.000296708
AFFX-BioB-M_at 2815.19 P 4.42246e-05
AFFX-BioB-3_at 1648.97 P 4.42873e-05
AFFX-BioC-5_at 4843.98 P 7.00668e-05
AFFX-BioC-3_at 6315.83 P 4.42873e-05
AFFX-BioDn-5_at 10640.5 P 4.42873e-05
AFFX-BioDn-3_at 21128.3 P 4.42873e-05
AFFX-CreX-5_at 52028.8 P 5.16732e-05
AFFX-CreX-3_at 68735.2 P 4.42873e-05
AFFX-DapX-5_at 11.8269 A 0.724854
AFFX-DapX-M_at 41.9601 A 0.544587
AFFX-DapX-3_at 7.21383 A 0.98333
AFFX-LysX-5_at 5.465 A 0.876634
AFFX-LysX-M_at 50.035 A 0.631562
AFFX-LysX-3_at 48.1867 A 0.368438
AFFX-PheX-5_at 4.23353 A 0.9273
AFFX-PheX-M_at 22.9358 A 0.705874
AFFX-PheX-3_at 121.249 A 0.327079
AFFX-ThrX-5_at 85.1616 A 0.340661
AFFX-ThrX-M_at 37.2709 A 0.559359

Total number of rows: 54675

Table truncated, full table size 1620 Kbytes.




Supplementary file Size Download File type/resource
GSM349734.CEL.gz 4.4 Mb (ftp)(http) CEL
GSM349734.CHP.gz 298.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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