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Sample GSM339548 Query DataSets for GSM339548
Status Public on Nov 08, 2008
Title Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -10
Sample type RNA
 
Source name ecotype 'Columbia'
Organism Arabidopsis thaliana
Characteristics Pap1 sample in day 12
Extracted molecule total RNA
Extraction protocol RNA was isolated from 1 g of frozen pooled leaf tissue according to the manufacturer's instructions (PureLinkTM Plant RNA Reagent, Invitrogen) with one RNA clean-up using PureLinkTM Micro-to-Midi Total RNA Purification System (Invitrogen).
Label biotin
Label protocol according to Affymetrix
 
Hybridization protocol Standard precedures recomended by Affymetrix
Scan protocol Standard precedures recomended by Affymetrix
Description d12Pap
Data processing RMA background correction and normalization
 
Submission date Nov 04, 2008
Last update date Aug 28, 2018
Contact name Mingshu Cao
E-mail(s) [email protected], [email protected]
Phone 64-6-351-8163
Organization name HortResearch/AgResearch
Street address Tennent Drive
City Palmerston North
ZIP/Postal code 4442
Country New Zealand
 
Platform ID GPL198
Series (1)
GSE13469 Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
244901_at 4.9
244902_at 4.4
244903_at 5.2
244904_at 4.8
244905_at 3.8
244906_at 5.2
244907_at 3.5
244908_at 3.3
244909_at 3.6
244910_s_at 3.2
244911_at 2.8
244912_at 6.8
244913_at 3.9
244914_at 2.8
244915_s_at 3.8
244916_at 3.6
244917_at 3.5
244918_at 3.2
244919_at 4.5
244920_s_at 5

Total number of rows: 22810

Table truncated, full table size 311 Kbytes.




Supplementary file Size Download File type/resource
GSM339548.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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