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Sample GSM33913

Query DataSets for GSM33913

Status

Public on Oct 28, 2004

Title

HCC083_Cy5

Sample type

RNA

Channel 1

Source name

HCC083

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42232

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC083
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-2.153	0.225	1	1	1	232	133	226	134	169	67	140	69	-50
1174364_1	-0.281	0.823	1	1	2	4658	1368	225	136	6004	1182	148	72	0
1175152_1	-0.152	0.900	1	1	3	1674	766	220	130	1896	746	140	70	0
1175940_1	-0.296	0.814	1	1	4	2707	1111	226	149	3457	1467	146	102	0
1176716_1	-0.223	0.857	1	1	5	1921	608	221	130	2294	690	138	87	0
1177504_1	-0.530	0.693	1	1	6	911	401	221	132	1224	416	141	80	0
1178580_1	-0.302	0.811	1	1	7	1981	748	220	142	2503	614	143	62	0
1179356_1	-0.801	0.574	1	1	8	728	316	229	135	1088	331	143	132	0
1180144_1	-0.424	0.745	1	1	9	1258	594	233	129	1639	631	144	126	0
1180932_1	-1.059	0.480	1	1	10	490	215	240	131	704	260	138	64	0
1181708_1	-1.760	0.295	1	1	11	338	189	241	142	505	207	148	78	0
1182496_1	-1.014	0.495	1	1	12	348	187	215	139	446	151	154	87	0
1183572_1	0.021	1.014	1	1	13	1292	524	229	148	1282	349	143	74	0
1184348_1	-1.246	0.422	1	1	14	347	180	224	130	462	192	145	62	0
1185136_1	0.169	1.124	1	1	15	254	149	224	131	167	94	138	65	-50
1185924_1	-0.426	0.744	1	1	16	524	240	224	138	579	193	141	75	0
1186700_1	-0.520	0.697	1	1	17	491	260	210	128	578	177	140	68	0
1187488_1	-0.702	0.615	1	1	18	362	193	211	135	405	161	138	69	0
1188564_1	-1.162	0.447	1	1	19	1684	469	226	128	3689	680	143	76	0
1189340_1	-0.206	0.867	1	1	20	793	298	226	131	848	290	137	69	0

Total number of rows: 21794

Table truncated, full table size 1383 Kbytes.

Supplementary data files not provided

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