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Sample GSM33890

Query DataSets for GSM33890

Status

Public on Oct 28, 2004

Title

HCC072_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC072

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41005

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC072
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.277	1.212	1	1	1	1415	650	159	110	1401	676	163	62	0
1174364_1	0.655	1.574	1	1	2	4652	1431	146	118	3575	1192	157	63	0
1175152_1	-0.378	0.769	1	1	3	569	259	156	105	792	252	151	68	0
1175940_1	-0.039	0.973	1	1	4	1078	319	165	104	1266	382	146	64	0
1176716_1	-0.068	0.954	1	1	5	1469	431	158	94	1788	453	147	58	0
1177504_1	0.603	1.519	1	1	6	1137	297	169	111	910	209	149	67	0
1178580_1	-0.153	0.899	1	1	7	2431	650	179	119	3141	754	150	95	0
1179356_1	-0.378	0.770	1	1	8	627	223	172	132	854	280	148	84	0
1180144_1	-0.271	0.829	1	1	9	771	345	165	120	1027	341	154	63	0
1180932_1	-0.248	0.842	1	1	10	418	186	162	99	514	175	151	59	0
1181708_1	-0.334	0.793	1	1	11	448	190	167	96	569	186	146	55	0
1182496_1	-1.267	0.416	1	1	12	254	133	175	93	379	114	152	57	0
1183572_1	-0.655	0.635	1	1	13	599	261	171	93	956	243	151	58	0
1184348_1	-1.020	0.493	1	1	14	267	130	165	92	403	90	156	65	0
1185136_1	-0.983	0.506	1	1	15	199	90	174	100	214	117	155	79	-50
1185924_1	-0.081	0.945	1	1	16	454	227	173	92	510	153	155	66	0
1186700_1	-0.040	0.972	1	1	17	537	238	173	106	608	244	161	87	0
1187488_1	-1.000	0.500	1	1	18	332	141	185	125	514	210	163	78	0
1188564_1	-0.311	0.806	1	1	19	3141	1032	186	114	4533	1173	155	64	0
1189340_1	-0.435	0.740	1	1	20	723	270	181	101	1039	299	164	67	0

Total number of rows: 21794

Table truncated, full table size 1377 Kbytes.

Supplementary data files not provided

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