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Sample GSM33800

Query DataSets for GSM33800

Status

Public on Oct 28, 2004

Title

HCC027_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC027

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 36453

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC027
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-1.493	0.355	1	1	1	227	81	121	40	650	243	307	49	0
1174364_1	1.179	2.264	1	1	2	2421	521	120	34	1478	383	309	49	0
1175152_1	-0.303	0.810	1	1	3	258	501	122	33	503	112	310	47	0
1175940_1	-0.452	0.731	1	1	4	428	146	121	36	793	180	310	55	0
1176716_1	-0.185	0.880	1	1	5	417	108	121	46	692	151	305	73	0
1177504_1	0.163	1.120	1	1	6	490	117	121	33	687	104	308	48	0
1178580_1	0.354	1.278	1	1	7	1158	293	122	36	1250	269	318	45	0
1179356_1	-0.781	0.582	1	1	8	205	61	123	32	474	63	312	50	0
1180144_1	-0.348	0.786	1	1	9	401	127	123	31	711	197	304	65	0
1180932_1	-2.148	0.226	1	1	10	156	42	125	32	473	76	315	52	0
1181708_1	-0.734	0.601	1	1	11	193	63	124	33	472	100	340	52	0
1182496_1	-0.864	0.549	1	1	12	187	67	123	33	480	65	346	49	0
1183572_1	0.076	1.054	1	1	13	533	121	127	38	784	124	341	159	0
1184348_1	-1.091	0.470	1	1	14	192	50	123	34	514	78	345	57	0
1185136_1	0.667	1.588	1	1	15	153	62	124	34	368	105	347	49	-50
1185924_1	-0.669	0.629	1	1	16	233	82	122	37	546	75	343	69	0
1186700_1	-0.085	0.943	1	1	17	343	98	129	39	611	94	350	76	0
1187488_1	-0.667	0.630	1	1	18	241	73	132	42	551	100	352	54	0
1188564_1	1.013	2.018	1	1	19	2528	503	133	41	1711	312	346	50	0
1189340_1	0.171	1.126	1	1	20	453	146	124	38	689	108	353	51	0

Total number of rows: 21775

Table truncated, full table size 1333 Kbytes.

Supplementary data files not provided

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