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Sample GSM33750

Query DataSets for GSM33750

Status

Public on Oct 28, 2004

Title

HCC002_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC002

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44073

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC002
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

[email protected]

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.561	0.678	1	1	1	407	191	157	136	769	272	295	113	0
1174364_1	0.935	1.912	1	1	2	8048	2024	159	111	5590	1699	287	167	0
1175152_1	0.146	1.106	1	1	3	477	277	161	114	652	109	285	89	0
1175940_1	-0.221	0.858	1	1	4	732	302	165	165	1145	630	296	167	0
1176716_1	0.743	1.673	1	1	5	1075	337	166	102	998	591	300	242	0
1177504_1	0.744	1.675	1	1	6	844	210	166	79	816	176	296	67	0
1178580_1	1.154	2.226	1	1	7	2055	542	172	112	1393	358	306	69	0
1179356_1	-0.422	0.746	1	1	8	403	150	159	106	720	105	300	68	0
1180144_1	-0.334	0.794	1	1	9	674	299	154	88	1127	268	285	89	0
1180932_1	-1.020	0.493	1	1	10	279	120	160	97	589	99	279	189	0
1181708_1	-0.382	0.767	1	1	11	378	181	163	94	646	131	286	388	0
1182496_1	-1.563	0.338	1	1	12	233	107	164	106	552	90	290	188	0
1183572_1	-0.391	0.762	1	1	13	576	236	166	146	997	222	306	204	0
1184348_1	-1.027	0.491	1	1	14	324	181	159	213	735	374	303	203	0
1185136_1	-0.876	0.545	1	1	15	197	124	158	98	384	198	292	110	-50
1185924_1	-0.379	0.769	1	1	16	325	140	161	88	563	122	289	231	0
1186700_1	-0.296	0.815	1	1	17	365	180	164	79	604	112	287	332	0
1187488_1	-1.156	0.449	1	1	18	319	157	172	123	724	191	303	324	0
1188564_1	-6.065	0.015	1	1	19	171	67	183	153	423	558	337	243	-50
1189340_1	0.332	1.259	1	1	20	686	217	207	227	842	301	353	397	0

Total number of rows: 21794

Table truncated, full table size 1374 Kbytes.

Supplementary data files not provided

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