NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM326186 Query DataSets for GSM326186
Status Public on Jul 01, 2009
Title I013
Sample type RNA
 
Source name Whole blood from septic patient with other infections
Organism Homo sapiens
Characteristics Age: 74
Gender: F
Ethnicity: Not Hispanic or Latino
Race: Asian
Illness: Sepsis/Other infections
Treatment: Ceftazidime, Clarithromycin
Pathogen: Corynebacterium spp.
Extracted molecule total RNA
Extraction protocol Tempus Spin Isolation Kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description The subject was infected with Corynebacterium spp.
Data processing The data were analysed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Oct 02, 2008
Last update date May 29, 2009
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE13015 Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
6960451 52.1594 0.00363901
2850504 -4.5649 0.6906841
7560397 -9.130626 0.852984
5360747 -19.08702 0.9876274
2600731 1302.367 0
3990110 -4.004514 0.6630276
2120309 -8.103172 0.8231441
6420474 56.66361 0.002183406
670095 -1.276958 0.5240175
130367 5.836994 0.2263464
3830242 -22.11643 0.9992722
6480041 -1.698695 0.5422125
7510608 1.958044 0.3813683
1570494 1.395768 0.4075691
1740092 -10.05703 0.8842795
3440520 -5.938142 0.7518195
6520451 11.29344 0.09170306
780746 -15.00243 0.9643377
150546 -5.048173 0.709607
2640192 -3.95932 0.6622999

Total number of rows: 48687

Table truncated, full table size 1262 Kbytes.




Supplementary file Size Download File type/resource
GSM326186_I013.xls.gz 3.1 Mb (ftp)(http) XLS
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap