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Sample GSM305737 Query DataSets for GSM305737
Status Public on Jul 15, 2009
Title MyD88-/- NS-2h
Sample type RNA
 
Source name MyD88-/- NS-2h
Organism Homo sapiens
Characteristics Fibroblasts derived from MyD88 deficient patient
Incubation time: 2 hours
Primary immune deficiency: MyD88 Deficiency
This sample was treated with no stimuli
Extracted molecule total RNA
Extraction protocol Rneasy Kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol Illumina BeadStation 500
Description This sample was treated with no stimuli.
Data processing Following background subtraction, the raw signal values extracted with Illumina Beadstudio version 2 software were scaled to the mean intensity of the dataset.
 
Submission date Jul 16, 2008
Last update date Jul 21, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE12124 In vitro response of fibroblasts isolated from patients with immunodeficiencies

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
6960451 124.5008 0
2850504 1.27775 0.333333
7560397 7.531603 0.069141
5360747 7.888512 0.064047
2600731 4280.434 0
3990110 8.053697 0.062591
2120309 125.2801 0
6420474 28.22025 0.004367
670095 -2.66334 0.672489
130367 -5.60579 0.876274
3830242 -11.664 0.994178
6480041 -4.70523 0.827511
7510608 139.9025 0
1570494 217.036 0
1740092 -2.50503 0.660844
3440520 -2.47769 0.659389
6520451 12.10384 0.021834
780746 0.206336 0.425036
150546 -5.35486 0.860262
2640192 5.649775 0.113537

Total number of rows: 48687

Table truncated, full table size 1168 Kbytes.




Supplementary file Size Download File type/resource
GSM305737.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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