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Sample GSM305728 Query DataSets for GSM305728
Status Public on Jul 15, 2009
Title IRAK4-/- IL1B-8h
Sample type RNA
 
Source name IRAK4-/- IL1B-8h
Organism Homo sapiens
Characteristics Fibroblasts derived from IRAK4 deficient patient
Incubation time: 8 hours
Primary immune deficiency: IRAK4 Deficiency
This sample was stimulated with IL1B
Extracted molecule total RNA
Extraction protocol Rneasy Kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridize 6-Sample Beadchip
Scan protocol Illumina BeadStation 500
Description This sample was stimulated with IL1B
Data processing Following background subtraction, the raw signal values extracted with Illumina Beadstudio version 2 software were scaled to the mean intensity of the dataset.
 
Submission date Jul 16, 2008
Last update date Jul 21, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6106
Series (1)
GSE12124 In vitro response of fibroblasts isolated from patients with immunodeficiencies

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
6960451 128.5528 0
2850504 -0.94167 0.510189
7560397 -2.26295 0.618632
5360747 3.646603 0.213246
2600731 3398.977 0
3990110 2.776189 0.256186
2120309 83.63466 0.000728
6420474 39.94945 0.002911
670095 2.057924 0.295488
130367 -2.7018 0.649199
3830242 -9.89691 0.989811
6480041 1.660515 0.328967
7510608 37.37651 0.002911
1570494 571.6549 0
1740092 -8.76993 0.969432
3440520 -0.09058 0.441776
6520451 11.24151 0.028384
780746 3.52885 0.221252
150546 -7.1706 0.924309
2640192 0.702421 0.388646

Total number of rows: 48687

Table truncated, full table size 1164 Kbytes.




Supplementary file Size Download File type/resource
GSM305728.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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