|
| Status |
Public on Dec 05, 2018 |
| Title |
Progressive sarcoidosis sample 1 [sarcexp] |
| Sample type |
RNA |
| |
|
| Source name |
BALF
|
| Organism |
Homo sapiens |
| Characteristics |
group: Prog Sarc
Sex: Male
race: AA
ethnicity: non-hispanic
smoking status: Former
scadding: 4
forced vital capacity, percent predicted: 88
forced expiratory volume in one second, percent predicted: 75
diffusing capacity of the lung for carbon monoxide, percent predicted: 58
age: 55
treatment: Treated
1stdrug: Steroid
|
| Treatment protocol |
NA, cells were not treated prior to extraction
|
| Growth protocol |
NA, primary cells used
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard Qiagen AllPrep protocol
|
| Label |
Cy3
|
| Label protocol |
Agilent low input quick amp labeling protocol
|
| |
|
| Hybridization protocol |
Agilent low input quick amp labeling protocol
|
| Scan protocol |
NimbleGen MS200
|
| Description |
PolyA-selected total RNA extracted from BAL fluid
|
| Data processing |
Agilent Feature Extraction, followed by quantile normalization and log2 transformation
|
| |
|
| Submission date |
Feb 18, 2018 |
| Last update date |
Dec 05, 2018 |
| Contact name |
Ivana Yang |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Colorado - Anschutz Medical Campus
|
| Street address |
12700 E 19th Ave
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL21185 |
| Series (2) |
| GSE110777 |
DNA Methylation Changes in Lung Immune Cells are Associated with Granulomatous Lung Disease [sarcexp] |
| GSE110780 |
DNA Methylation Changes in Lung Immune Cells are Associated with Granulomatous Lung Disease |
|
